Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O21
         (544 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17887-1|AAA36472.1|  115|Homo sapiens protein ( Human acidic ri...    95   1e-19
CR542248-1|CAG47044.1|  115|Homo sapiens RPLP2 protein.                95   1e-19
CR542212-1|CAG47008.1|  115|Homo sapiens RPLP2 protein.                95   1e-19
BC062314-1|AAH62314.1|  115|Homo sapiens ribosomal protein, larg...    95   1e-19
BC007573-1|AAH07573.1|  115|Homo sapiens ribosomal protein, larg...    95   1e-19
BC005920-1|AAH05920.1|  115|Homo sapiens ribosomal protein, larg...    95   1e-19
BC005354-1|AAH05354.1|  115|Homo sapiens ribosomal protein, larg...    95   1e-19
AB061837-1|BAB79475.1|  115|Homo sapiens ribosomal protein P2 pr...    95   1e-19
AF011843-1|AAD01477.1|  273|Homo sapiens MHC class I chain-relat...    31   3.4  
Y18118-1|CAA77037.1|  274|Homo sapiens MICA protein.                   30   4.6  
Y18110-1|CAA77029.1|  274|Homo sapiens MICA protein.                   30   4.6  
U69627-1|AAB51783.1|  181|Homo sapiens PERB11.1 protein protein.       30   4.6  
U56951-1|AAB41071.1|  274|Homo sapiens MHC class I chain-related...    30   4.6  
AF336082-1|AAK20899.1|  359|Homo sapiens MHC class I chain-relat...    30   4.6  
AF106649-1|AAD19603.1|  273|Homo sapiens MHC class I chain-relat...    30   4.6  
AB088108-1|BAC54940.1|  359|Homo sapiens MHC class I polypeptide...    30   4.6  

>M17887-1|AAA36472.1|  115|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P2 mRNA, complete cds. ).
          Length = 115

 Score = 95.5 bits (227), Expect = 1e-19
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 244
           MRYVA+YLLA LGG +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G G
Sbjct: 1   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60

Query: 245 KLSSM 259
           KL+S+
Sbjct: 61  KLASV 65


>CR542248-1|CAG47044.1|  115|Homo sapiens RPLP2 protein.
          Length = 115

 Score = 95.5 bits (227), Expect = 1e-19
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 244
           MRYVA+YLLA LGG +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G G
Sbjct: 1   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60

Query: 245 KLSSM 259
           KL+S+
Sbjct: 61  KLASV 65


>CR542212-1|CAG47008.1|  115|Homo sapiens RPLP2 protein.
          Length = 115

 Score = 95.5 bits (227), Expect = 1e-19
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 244
           MRYVA+YLLA LGG +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G G
Sbjct: 1   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60

Query: 245 KLSSM 259
           KL+S+
Sbjct: 61  KLASV 65


>BC062314-1|AAH62314.1|  115|Homo sapiens ribosomal protein, large,
           P2 protein.
          Length = 115

 Score = 95.5 bits (227), Expect = 1e-19
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 244
           MRYVA+YLLA LGG +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G G
Sbjct: 1   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60

Query: 245 KLSSM 259
           KL+S+
Sbjct: 61  KLASV 65


>BC007573-1|AAH07573.1|  115|Homo sapiens ribosomal protein, large,
           P2 protein.
          Length = 115

 Score = 95.5 bits (227), Expect = 1e-19
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 244
           MRYVA+YLLA LGG +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G G
Sbjct: 1   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60

Query: 245 KLSSM 259
           KL+S+
Sbjct: 61  KLASV 65


>BC005920-1|AAH05920.1|  115|Homo sapiens ribosomal protein, large,
           P2 protein.
          Length = 115

 Score = 95.5 bits (227), Expect = 1e-19
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 244
           MRYVA+YLLA LGG +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G G
Sbjct: 1   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60

Query: 245 KLSSM 259
           KL+S+
Sbjct: 61  KLASV 65


>BC005354-1|AAH05354.1|  115|Homo sapiens ribosomal protein, large,
           P2 protein.
          Length = 115

 Score = 95.5 bits (227), Expect = 1e-19
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 244
           MRYVA+YLLA LGG +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G G
Sbjct: 1   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60

Query: 245 KLSSM 259
           KL+S+
Sbjct: 61  KLASV 65


>AB061837-1|BAB79475.1|  115|Homo sapiens ribosomal protein P2
           protein.
          Length = 115

 Score = 95.5 bits (227), Expect = 1e-19
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 244
           MRYVA+YLLA LGG +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G G
Sbjct: 1   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60

Query: 245 KLSSM 259
           KL+S+
Sbjct: 61  KLASV 65


>AF011843-1|AAD01477.1|  273|Homo sapiens MHC class I chain-related
           protein A protein.
          Length = 273

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   DEGKTNILFSAIHVSCLSDLKNALRGRVFTRR 96
           D  KT  L+ A+H  CL +L+  L+  V  RR
Sbjct: 148 DAMKTKTLYHAMHADCLQELRRYLKSSVVLRR 179


>Y18118-1|CAA77037.1|  274|Homo sapiens MICA protein.
          Length = 274

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   DEGKTNILFSAIHVSCLSDLKNALRGRVFTRR 96
           D  KT  L+ A+H  CL +L+  L+  V  RR
Sbjct: 149 DAMKTKTLYHAMHADCLQELRRYLKSGVVLRR 180


>Y18110-1|CAA77029.1|  274|Homo sapiens MICA protein.
          Length = 274

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   DEGKTNILFSAIHVSCLSDLKNALRGRVFTRR 96
           D  KT  L+ A+H  CL +L+  L+  V  RR
Sbjct: 149 DAMKTKTLYHAMHADCLQELRRYLKSGVVLRR 180


>U69627-1|AAB51783.1|  181|Homo sapiens PERB11.1 protein protein.
          Length = 181

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   DEGKTNILFSAIHVSCLSDLKNALRGRVFTRR 96
           D  KT  L+ A+H  CL +L+  L+  V  RR
Sbjct: 149 DAMKTKTLYHAMHADCLQELRRYLKSGVVLRR 180


>U56951-1|AAB41071.1|  274|Homo sapiens MHC class I chain-related
           protein A protein.
          Length = 274

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   DEGKTNILFSAIHVSCLSDLKNALRGRVFTRR 96
           D  KT  L+ A+H  CL +L+  L+  V  RR
Sbjct: 149 DAMKTKTLYHAMHADCLQELRRYLKSGVVLRR 180


>AF336082-1|AAK20899.1|  359|Homo sapiens MHC class I chain-related
           protein A protein.
          Length = 359

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   DEGKTNILFSAIHVSCLSDLKNALRGRVFTRR 96
           D  KT  L+ A+H  CL +L+  L+  V  RR
Sbjct: 148 DAMKTKTLYHAMHADCLQELRRYLKSGVVLRR 179


>AF106649-1|AAD19603.1|  273|Homo sapiens MHC class I chain-related
           A antigen protein.
          Length = 273

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   DEGKTNILFSAIHVSCLSDLKNALRGRVFTRR 96
           D  KT  L+ A+H  CL +L+  L+  V  RR
Sbjct: 148 DAMKTKTLYHAMHADCLQELRRYLKSGVVLRR 179


>AB088108-1|BAC54940.1|  359|Homo sapiens MHC class I
           polypeptide-related sequence A protein.
          Length = 359

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   DEGKTNILFSAIHVSCLSDLKNALRGRVFTRR 96
           D  KT  L+ A+H  CL +L+  L+  V  RR
Sbjct: 148 DAMKTKTLYHAMHADCLQELRRYLKSGVVLRR 179


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,000,597
Number of Sequences: 237096
Number of extensions: 942458
Number of successful extensions: 5857
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5857
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5308067764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)