Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_O19
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 29 0.35
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 29 0.61
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 28 0.81
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.5
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 27 2.5
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 26 3.3
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 4.3
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 26 4.3
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ... 25 5.7
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 7.5
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 25 7.5
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 10.0
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 10.0
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 25 10.0
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 25 10.0
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 29.5 bits (63), Expect = 0.35
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 459 ISTGDDEKKDKIDVDNCDDEENSLQKVDLFHLC 557
++TG D K+D+ CD ENS LF C
Sbjct: 25 VATGIDSMPSKVDITPCDLLENSKSSAPLFVEC 57
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 28.7 bits (61), Expect = 0.61
Identities = 17/78 (21%), Positives = 41/78 (52%)
Frame = +3
Query: 75 LNNLEDFVWDNYANHILRSALKCLSGINLLPGEKPKVNLFKKLVDDNKGIPPHTTEMVYR 254
L++L + + D+ ++ ++ + K + IN LPG + ++ + D +GI H + ++
Sbjct: 71 LSSLLEGLSDSKSSTLVVADPKLGNAINKLPGLEFEIISDSSVQDLYRGIREHLSSLISG 130
Query: 255 IVPDEFDEIVKDFAHRLS 308
+ P + + + +H LS
Sbjct: 131 LAPSDLNAMSLGLSHSLS 148
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 28.3 bits (60), Expect = 0.81
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 249 YRIVPDEFDEIVKDFAHRLSAW 314
Y +VP + DEI DF + AW
Sbjct: 505 YTMVPPDLDEICVDFVQKFGAW 526
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 444 APDDWISTGDDEKKDKIDVDNCDDEENSLQKVD 542
+PDDW S+ + ++D NC NS Q D
Sbjct: 447 SPDDWASSWYSTVRSQLDSYNCQFVVNSNQPKD 479
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/68 (20%), Positives = 27/68 (39%)
Frame = +3
Query: 111 ANHILRSALKCLSGINLLPGEKPKVNLFKKLVDDNKGIPPHTTEMVYRIVPDEFDEIVKD 290
A+ + +C G+ EK LF+ + + + + T + P E EI++
Sbjct: 72 ASSVFHYGFECFEGMKAFRDEKGVPRLFRPIKNAERMLSTGTRISLPSFDPAELAEIIRK 131
Query: 291 FAHRLSAW 314
F + W
Sbjct: 132 FVAHENRW 139
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 135 LKCLSG--INLLPGEKPKVNLFKKLVDDNKGIPPHTTEMVY 251
+K L+G I L KV+ K+ V++ +GIPP ++Y
Sbjct: 5 VKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIY 45
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 135 LKCLSGINLLPGEKPKVNLFKKLVDDNKGIPPHTTEM 245
L+ LSG+ + KP L LV+ +P H + M
Sbjct: 365 LQILSGLTGIRFNKPLFKLLGSLVEHRSSVPNHLSHM 401
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 435 ESFAPDDWISTGD 473
ESF PD W TGD
Sbjct: 506 ESFTPDGWFRTGD 518
>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 258 VPDEFDEIVKDFAHRLSAWPQFKDLPYQNITSALLQVL 371
VP EF+EI + A SAW D ++TS LL L
Sbjct: 134 VPTEFEEIPSEAATIASAWAGGTD--GMDVTSTLLNQL 169
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 195 KKLVDDNKGIPPHTTEMVYRIVPDEFDEIVKDFAHRL-SAWPQFKD 329
K L+ DN I + +V E EI+ + HR+ + +PQ D
Sbjct: 184 KTLLSDNSPIVVPAALFTFEVVCPEKLEIIHPYYHRICTLFPQMND 229
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 9 NTYSEEHLKKCHEFTIKLCKYA 74
+TY LKK E+ KLC++A
Sbjct: 236 STYEVSELKKFWEYADKLCQFA 257
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 435 ESFAPDDWISTGDDEKKDKIDVDNCDDEE 521
ES+ P+++IS ++ KDK DN + EE
Sbjct: 14 ESYPPENFISNEPEKSKDK---DNFNGEE 39
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +3
Query: 45 EFTIKLCKYALNNLEDFVWDNYANHILRSALKCL 146
E ++L + ++ D V D NH+++ A++C+
Sbjct: 497 EHQVQLIQELDGHVLDCVCDQNGNHVIQKAIECI 530
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = +3
Query: 24 EHLKKCHEFTIKLCKYALNNLEDFVWDNYANH 119
++++K +FT+ Y+ ++++ F D +NH
Sbjct: 357 DYMEKYRDFTVDPVSYSKSDMQTFFSDLVSNH 388
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +3
Query: 249 YRIVPDEFDEIVKDFAHRLSAWPQFKDLPYQNITSALLQVLLYAV 383
Y+I +E +E + +P F P + S Q + YA+
Sbjct: 40 YKIYNNEEEEAADFVMEHVDVYPNFTKKPITKVVSCATQDIFYAL 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,560
Number of Sequences: 5004
Number of extensions: 45490
Number of successful extensions: 141
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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