Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O19
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0669 - 26084906-26087350                                         28   5.8  
06_03_0593 + 22596372-22596384,22596856-22597037,22597119-225973...    27   7.7  

>11_06_0669 - 26084906-26087350
          Length = 814

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 256 IL*TISVVCGGIPLLSSTSFLNKFTLGFSPGNKLIPLRHFKALR 125
           I+ T  + C  I +L+S   L  F +   PG +L  LRH   LR
Sbjct: 559 IIATADLNCPNIGMLTSLQTLPLFPVKKEPGYELQQLRHLNKLR 602


>06_03_0593 +
           22596372-22596384,22596856-22597037,22597119-22597344,
           22597429-22597855,22598075-22598429,22598511-22599089
          Length = 593

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 453 DWISTGDDEKKDKIDVDN 506
           DW S  DDE+ D +D DN
Sbjct: 247 DWNSDSDDEESDDLDEDN 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,029,625
Number of Sequences: 37544
Number of extensions: 265475
Number of successful extensions: 792
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)