Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O16
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1038 - 33997124-33997177,33997256-33997318,33997456-339975...    27   9.5  

>01_06_1038 -
           33997124-33997177,33997256-33997318,33997456-33997506,
           33998100-33998257,33998406-33998491,33998674-33999527
          Length = 421

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 142 LIVKGFCLI*NVISFTYFYFDSWIGLITPGPFNPVNGIRISP 267
           ++V  FC+  NVI F Y Y  +      P P +     +ISP
Sbjct: 137 IVVMQFCIWYNVIIFLYEYMAARRSASAPPPASSEGSAKISP 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,166,795
Number of Sequences: 37544
Number of extensions: 243357
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)