Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O16
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-9|CAB05232.2|  260|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U58763-1|AAK68877.2|  559|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z82274-9|CAB05232.2|  260|Caenorhabditis elegans Hypothetical
           protein JC8.5 protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 178 ISFTYFYFDSWIGLITPGPFNPVNGIRISP 267
           I  +Y +F++  GL  P PF+P N   I+P
Sbjct: 221 ILLSYTFFEAKSGLKLPDPFDPKNRPSIAP 250


>U58763-1|AAK68877.2|  559|Caenorhabditis elegans Hypothetical
           protein F10C5.2 protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 363 WTKFYLAIYKVLCQFEYDQQS*KKVTKLVLQIR*Y 259
           W KF+ A  ++L + EY++Q+ K   + + Q+R Y
Sbjct: 310 WRKFFPARRRLLNEEEYEEQAEKTTKEQLAQLREY 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,550,664
Number of Sequences: 27780
Number of extensions: 224986
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)