Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O15
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   4.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.1  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    25   7.1  
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    25   9.4  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 378 QQHSLSTTNIYCDRQPACQAWR 443
           ++H+   T+++CD    C AWR
Sbjct: 166 RKHTCFHTSVWCDMSSYCIAWR 187


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 372  PLVYPLVAFYDTHGNDMEWYY 310
            PL  PL +F D H ND  W Y
Sbjct: 1552 PLRKPLYSFMDLHAND-TWMY 1571


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 464 DKEELS*SPRLAGRLTIAVDVCGA*RMLLPIPWF 363
           DK+ELS    LAG + + VD+     + LP  WF
Sbjct: 363 DKDELS---ALAGTVPLVVDLEPGDMLYLPASWF 393


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 105 VKAHQFYVQAYVYYY 61
           +K H+ YV AY+Y Y
Sbjct: 185 LKGHEGYVDAYIYQY 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,005
Number of Sequences: 5004
Number of extensions: 36095
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)