Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O15
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909...    29   1.8  
01_06_0199 - 27467548-27469992                                         29   1.8  
04_04_0830 + 28491556-28492103,28492713-28492806,28492968-28493054     29   3.1  
03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501           29   3.1  
11_03_0164 + 10972526-10972723,10972818-10973549,10974148-109742...    28   5.4  

>11_08_0079 +
           28189782-28189907,28190445-28190553,28190876-28190958,
           28191500-28191562,28191658-28192854,28193247-28193310,
           28193338-28193426,28194404-28194463,28195442-28195547,
           28196057-28196069,28196940-28197111
          Length = 693

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 306 KSSTTPYRSRGCRKR-RLRDKPGDGQQHSLSTTNIYCDRQ 422
           K  T P +SRG   R RLR K GDG    +S      DRQ
Sbjct: 35  KPKTAPLQSRGMVDRFRLRAKGGDGGNGCISLRRSRSDRQ 74


>01_06_0199 - 27467548-27469992
          Length = 814

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 422 TCLPSVAIMTIPPYLWGRPMSNSGR 496
           TC P+V+I+T+P  ++G    NSG+
Sbjct: 433 TCNPNVSIVTVPAAVYGMAPRNSGK 457


>04_04_0830 + 28491556-28492103,28492713-28492806,28492968-28493054
          Length = 242

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +3

Query: 294 WCRLKSSTTPYRSRGCRKRRLRDKPGDGQQHSLS 395
           W R K   TP    G R+RRLR   GDG+ H  S
Sbjct: 68  WSREKKVRTPIGGGGQRRRRLR--LGDGRAHRRS 99


>03_02_0089 + 5561622-5561855,5562748-5563247,5563411-5563501
          Length = 274

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 327 RSRGCRKRRLRDKPGDGQQH 386
           R RGCR RR  D  GD +QH
Sbjct: 44  RRRGCRPRRQLDAAGDVRQH 63


>11_03_0164 +
           10972526-10972723,10972818-10973549,10974148-10974285,
           10974522-10974991,10975069-10975239,10975320-10975602,
           10975682-10975795
          Length = 701

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 348 RRLRDKPGDGQQHSLSTTNIYCDRQPACQ 434
           RR++DKP  G+  S +TT     R P  Q
Sbjct: 63  RRMQDKPQQGEPMSTTTTGTTSSRNPRTQ 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,235,497
Number of Sequences: 37544
Number of extensions: 241577
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)