Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O14
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    42   6e-05
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    30   0.21 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.0  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    26   3.4  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   7.9  

>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = -3

Query: 458  TSLIQKDKQMEALVEKLCQRFKLSTEERQWRDLAYCLSLFTYNERSLRKLIEN 300
            TS I+K++  + L E+L  R      +RQW  + Y LSL  +   +++KLI++
Sbjct: 1102 TSFIEKERHTKQLAERLAARLDRCKTQRQWDHVVYALSLLPHKADNIQKLIDD 1154


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 344 LFTYNERSLRKLIENLDCYKDKLHSQGVMESFNTLMN 234
           L+  NERS++ L+ +L+   DKL  Q   E+ NT +N
Sbjct: 272 LYVCNERSIKHLVASLERSGDKLKKQAT-ETINTTVN 307


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 400 LWHSFSTRASICLSFCISDVIYLKIIKMHLKNIHYI 507
           L H+F+   SIC   C++    L+++  H  ++H++
Sbjct: 110 LRHTFTANGSICEVVCLNFSKALRLLLSHSPHLHHL 145


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 305 ENLDCYKDKLHSQGVMESFNTLMNNTSKMAKIEIKV 198
           E L+ + D+LH + V E  + L+ N  +  K +IK+
Sbjct: 231 EFLNLFLDELHEEFVRERRHYLLKNDERNPKSDIKI 266


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 150 VTSYFRNKNIDISLVRSLFLIFDIETRH 67
           V S +RNK+I  SL+ S  ++   E RH
Sbjct: 466 VESEYRNKHIFYSLLNSFTMVMFPELRH 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,662
Number of Sequences: 5004
Number of extensions: 39031
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)