Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O14
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392...    86   2e-17
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    35   0.053
12_01_0591 - 4835894-4836328,4836343-4837882,4838911-4839050,484...    28   4.6  
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481...    28   6.1  
12_01_0556 - 4514686-4514868,4515168-4515290,4515381-4515617,451...    28   6.1  
11_01_0758 + 6362500-6363233,6363709-6365500                           27   8.0  

>07_03_1562 - 27738369-27738568,27738767-27738962,27739079-27739230,
            27739775-27739832,27739923-27740038,27740117-27740237,
            27740348-27740635,27740817-27740987,27741091-27741741,
            27742515-27742676,27742764-27743904,27743992-27744152,
            27744239-27744564,27745678-27745825
          Length = 1296

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 39/86 (45%), Positives = 55/86 (63%)
 Frame = -3

Query: 455  SLIQKDKQMEALVEKLCQRFKLSTEERQWRDLAYCLSLFTYNERSLRKLIENLDCYKDKL 276
            S I+KDKQMEALV+KLC RF    + RQW  ++YCLS  T+ E+ L+KL++N   ++  L
Sbjct: 1091 SSIKKDKQMEALVDKLCNRFAGVNDVRQWEYISYCLSQLTFTEKGLKKLVDNFKIFEHAL 1150

Query: 275  HSQGVMESFNTLMNNTSKMAKIEIKV 198
                VM  F T++    K AK ++KV
Sbjct: 1151 SEDSVMNHFRTVIAKCKKFAKPDLKV 1176


>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
            10791796-10791903,10793133-10797686,10798347-10798461,
            10799597-10799724,10799843-10800043,10800158-10800227,
            10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
 Frame = -3

Query: 452  LIQKDKQMEALVEK--LCQ-RFKLSTEERQ-WRDLAYCLSLFTYNERS-LRKLIENLDCY 288
            L++K  + E  V++   C+ ++K  TE+R+ + DL    SL T + +  LR ++EN +  
Sbjct: 914  LMEKLTESERYVQEHESCESKYKACTEDRKRFEDLLMKESLQTSHLKDELRSVVENFEAM 973

Query: 287  KDKLHSQGVMESFNTLMNNTSKM 219
            KD+LH Q  +   NT M   S +
Sbjct: 974  KDELHKQSTL---NTDMQTVSAL 993


>12_01_0591 -
           4835894-4836328,4836343-4837882,4838911-4839050,
           4840051-4840605
          Length = 889

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = -3

Query: 437 KQMEALVEKLCQRFKLSTEERQWRDLAYCLSLFTYNERSLRKLIENLDCYKDKLHSQGVM 258
           + MEAL+EKL    +L  + ++WRD            R +   IE  DC  D +H  G  
Sbjct: 43  RSMEALLEKLACMDELDVQVKEWRD----------QVREMSYDIE--DCIDDFVHRLGKY 90

Query: 257 ESFNTLMNNTSKMAK 213
           +  + L+  T+++ +
Sbjct: 91  DVRSGLIKKTTELPR 105


>12_01_0590 -
           4813764-4814401,4814785-4814872,4815176-4815376,
           4816803-4816830,4817136-4817339,4817352-4819136,
           4820358-4821139
          Length = 1241

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 24/81 (29%), Positives = 34/81 (41%)
 Frame = -3

Query: 455 SLIQKDKQMEALVEKLCQRFKLSTEERQWRDLAYCLSLFTYNERSLRKLIENLDCYKDKL 276
           SL  + + M AL+EKL    +L  + ++WRD            R +   IE  DC  D L
Sbjct: 36  SLEDELRSMRALLEKLAAMDELDGQAKEWRD----------QVREMSYDIE--DCIDDFL 83

Query: 275 HSQGVMESFNTLMNNTSKMAK 213
           H        N  ++ T K  K
Sbjct: 84  HQLDKNNGSNGFVHKTVKFLK 104


>12_01_0556 -
           4514686-4514868,4515168-4515290,4515381-4515617,
           4515747-4516358
          Length = 384

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 134 VIKISIYLWFGHYF*YSILKPAIIQLNLKLNMPWSSI 24
           ++ +  YLWFG+   Y I++P    L LK N   S++
Sbjct: 232 ILVVLAYLWFGNLSKYGIVRPNKGPLLLKANTGRSAV 268


>11_01_0758 + 6362500-6363233,6363709-6365500
          Length = 841

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = +1

Query: 316 RSDLSLYVNKDKQYAKSRH*RSSVDSLNLWHSFSTRASICLSFCISDVIYLKIIKMHLKN 495
           R+D+ +        A S H R S++ + ++H  S  A  CL    S V+YL   +  + N
Sbjct: 704 RNDIDILSGLPVLTAVSLHIRQSMEEIIVFHRESFPALDCLKLSCS-VLYLTFQEEAMPN 762

Query: 496 IHYIILFLSGDDRQLQY 546
           +  + L  +   R+  Y
Sbjct: 763 LRRLKLGFNAHRREFFY 779


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,491,777
Number of Sequences: 37544
Number of extensions: 198605
Number of successful extensions: 384
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)