Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O14
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077542-5|AAC26299.1|  883|Caenorhabditis elegans Hypothetical ...    32   0.25 
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U88314-9|AAF99881.1|  408|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF039052-1|AAF98628.2|   87|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF025450-5|AAO38669.1|  363|Caenorhabditis elegans Skn-1 depende...    27   9.5  

>AF077542-5|AAC26299.1|  883|Caenorhabditis elegans Hypothetical
           protein Y57G7A.6 protein.
          Length = 883

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -3

Query: 437 KQMEALVEKLCQRFKLSTEERQWRDLAY-CLSLFTYNERSLRKLIENLDCYKD 282
           K M  L+  L Q+FKL  +    ++ A     L  + + S++ LI++LDC+KD
Sbjct: 436 KIMGRLLLPLTQKFKLIQDSGSLQEHADGAQGLMNFRKASIQTLIDHLDCFKD 488


>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical
           protein F33H1.4 protein.
          Length = 1385

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 385 VDSLNLWHSFSTRASICLSFCISDVIYLKIIKMHLKNIH 501
           VD  NL  SF    +IC   C   V+Y K++  HL   H
Sbjct: 703 VDRGNLEFSFLDTNNICCGLCGEIVVYDKLLTEHLPTAH 741


>U88314-9|AAF99881.1|  408|Caenorhabditis elegans Hypothetical
           protein C46H11.2 protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -3

Query: 410 LCQRFKLSTEERQWRDLAYCLSLFTYNERSLRKLIENLDCYKDKLHSQGVMESFN 246
           L  RF    +  QW  LA    L  ++E    K IEN+  Y  +     V+E  N
Sbjct: 337 LAVRFYHLLQSEQWEYLARIAKLGNFDEWPYMKTIENITTYLQEKRKSNVIEYKN 391


>AF039052-1|AAF98628.2|   87|Caenorhabditis elegans Hypothetical
           protein T22D1.6 protein.
          Length = 87

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +1

Query: 409 SFSTRASICLSFC--ISDVIYL--KIIKMHLKNIHYIILFLSGDDRQLQYFV 552
           +F  R  IC +FC    DV+ L  K  K +   I  +I  +S D ++L+Y +
Sbjct: 2   NFEKRTKICCNFCGIYIDVLELISKFKKYYEAQIKVVIESVSNDVKELRYLM 53


>AF025450-5|AAO38669.1|  363|Caenorhabditis elegans Skn-1 dependent
           zygotic transcriptprotein 5 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 340 NKDKQYAKSRH*RSSVDSLNLWHSFSTRASICLSFCI--SDVIYLKIIK 480
           + +K Y K  H       +N+  +  T A+IC+  CI   + I++K+++
Sbjct: 307 DNNKNYVKIEHFDVFEGDMNIIRNDGTLATICIKKCIFLKNSIFIKVLR 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,624,946
Number of Sequences: 27780
Number of extensions: 205241
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)