Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O13
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   184   1e-47
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    53   3e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    44   2e-05
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   5.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   9.9  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   9.9  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  184 bits (447), Expect = 1e-47
 Identities = 90/164 (54%), Positives = 112/164 (68%), Gaps = 1/164 (0%)
 Frame = +2

Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
           LF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK 
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85

Query: 359 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXD-EPPPKRPNTLRAGTNTVTKLVEK 535
           TA  +FK+L KYRPET                     +   K+P  ++ G N V  L+E 
Sbjct: 86  TATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEA 145

Query: 536 KKAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRLGAL 667
           KKA+LV+IA DVDPIELV+FLPALC+ MGVPY IVK K+RLG +
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTV 189


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 24/56 (42%), Positives = 34/56 (60%)
 Frame = +2

Query: 494 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRLG 661
           LR G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = +2

Query: 479 KRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRL 658
           K+ + LR G   V K V K +  LV++A D+ P++++  +P LC    VPY     K  L
Sbjct: 50  KQKHILR-GVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELL 108

Query: 659 G 661
           G
Sbjct: 109 G 109


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 287 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 388
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 300 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 398
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 612 RQSAGRKSTSSIGSTS*AMTTSCAFFFSTSLVT 514
           +Q +  KS+  +G T+   TTS +  F+T+L T
Sbjct: 633 QQISSNKSSEFVGQTTTEYTTSGSVGFTTTLAT 665


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 359 TAKGLFKILEKYR 397
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,240
Number of Sequences: 5004
Number of extensions: 47581
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)