Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_O13
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 187 8e-48
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 161 6e-40
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 160 1e-39
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 49 4e-06
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 48 9e-06
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 40 0.002
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 40 0.002
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 33 0.27
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 33 0.27
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 2.5
01_01_0437 - 3293624-3294029,3294094-3294212 29 3.3
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 7.7
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 187 bits (455), Expect = 8e-48
Identities = 92/163 (56%), Positives = 113/163 (69%)
Frame = +2
Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 359 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 538
A LFK+L KYRPE K+P ++ G N VT L+E+
Sbjct: 84 LATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 142
Query: 539 KAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRLGAL 667
KAQLVVIAHDVDPIELV++LPALCR M VPYCIVKGK+RLG++
Sbjct: 143 KAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSI 185
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 161 bits (390), Expect = 6e-40
Identities = 84/163 (51%), Positives = 109/163 (66%)
Frame = +2
Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
LFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84
Query: 359 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 538
++L++ + E K+P ++ G + VT L+E+
Sbjct: 85 LGCQKERLLKRAQAEAEGKTVEA-----------------KKPIVVKYGLDHVTYLIEQS 127
Query: 539 KAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRLGAL 667
KAQLVVIAHDVDPIELV++LPALCR M +PYCIVKGK+RLG++
Sbjct: 128 KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSI 170
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 160 bits (388), Expect = 1e-39
Identities = 80/149 (53%), Positives = 99/149 (66%)
Frame = +2
Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 359 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 538
A LFK+L KYRPE K+P ++ G N VT L+E+
Sbjct: 68 LATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 126
Query: 539 KAQLVVIAHDVDPIELVLFLPALCR*MGV 625
KAQLVVIAHDVDPIELV++LPALCR M +
Sbjct: 127 KAQLVVIAHDVDPIELVVWLPALCRKMEI 155
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +2
Query: 494 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRLG 661
L+ G N TK + + A+ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 88
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +2
Query: 494 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRLG 661
L+ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 494 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRL 658
L+ G V K + + + L +IA ++ PI+++ +P LC +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDL 99
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 494 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRL 658
L+ G V K + + L VIA ++ PI+++ +P LC +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDL 99
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 32.7 bits (71), Expect = 0.27
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +2
Query: 503 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRLG 661
G K +EK AQL V+A D D + V + ALC V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 32.7 bits (71), Expect = 0.27
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +2
Query: 503 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRLG 661
G K +EK AQL V+A D D + V + ALC V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +2
Query: 200 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 367
N +GQD + ++ +V+ Y I Q+ + +L RLK PP + TQ + K K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411
Query: 368 GLFKILEK 391
+L+K
Sbjct: 412 AAKDVLQK 419
>01_01_0437 - 3293624-3294029,3294094-3294212
Length = 174
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 470 PPPKRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVD 574
PPP + R GT+++ + KA++ VI HD +
Sbjct: 34 PPPPQQQAARKGTHSLEGVKPLPKAEVSVICHDAN 68
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 300 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 425
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,539,107
Number of Sequences: 37544
Number of extensions: 337851
Number of successful extensions: 919
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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