Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_O13
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 204 6e-53
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 188 3e-48
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 118 3e-27
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 98 4e-21
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 53 2e-07
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 40 0.002
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 33 0.24
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 33 0.24
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 33 0.24
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 33 0.24
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 204 bits (497), Expect = 6e-53
Identities = 93/163 (57%), Positives = 118/163 (72%)
Frame = +2
Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 359 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 538
+A+ FK+L+KYRPE+ E KRPNT+R G NT+T+LVE +
Sbjct: 92 SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETR 151
Query: 539 KAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRLGAL 667
+AQLV+IAHDV+P+E+VL LPALCR VPY I+KGK+ LG +
Sbjct: 152 RAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 194
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 188 bits (458), Expect = 3e-48
Identities = 92/163 (56%), Positives = 117/163 (71%)
Frame = +2
Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 359 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 538
+A+ FK+L+KYRPE+ KRPNT+R G NT+T+LVE +
Sbjct: 92 SARQAFKLLDKYRPESTEVT--------------------KRPNTVRHGVNTITRLVETR 131
Query: 539 KAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRLGAL 667
+AQLV+IAHDV+P+E+VL LPALCR VPY I+KGK+ LG +
Sbjct: 132 RAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTV 174
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 118 bits (285), Expect = 3e-27
Identities = 51/76 (67%), Positives = 64/76 (84%)
Frame = +2
Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194
Query: 359 TAKGLFKILEKYRPET 406
+A+ FK+L+KYRPE+
Sbjct: 195 SARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 98.3 bits (234), Expect = 4e-21
Identities = 42/58 (72%), Positives = 50/58 (86%)
Frame = +2
Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 352
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = +2
Query: 494 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRLG 661
L+ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 491 TLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCR*MGVPYCIVKGKSRLG 661
TLR G V K + + + + ++A +V PI++ +P +C +PY + + +LG
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 32.7 bits (71), Expect = 0.24
Identities = 23/92 (25%), Positives = 39/92 (42%)
Frame = +1
Query: 109 DRDKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 288
D D+ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 31 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88
Query: 289 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 384
G AS+Q++ A+ P++ + + QD+
Sbjct: 89 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 120
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 32.7 bits (71), Expect = 0.24
Identities = 23/92 (25%), Positives = 39/92 (42%)
Frame = +1
Query: 109 DRDKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 288
D D+ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 289 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 384
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 32.7 bits (71), Expect = 0.24
Identities = 23/92 (25%), Positives = 39/92 (42%)
Frame = +1
Query: 109 DRDKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 288
D D+ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 289 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 384
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 32.7 bits (71), Expect = 0.24
Identities = 23/92 (25%), Positives = 39/92 (42%)
Frame = +1
Query: 109 DRDKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 288
D D+ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 289 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 384
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -1
Query: 234 LVGWMSWPIAKF--FVLFSNRGFTIF 163
LVGW +W I F +L SNR F +F
Sbjct: 97 LVGWFAWCIGPFSQVLLTSNRIFAVF 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,380,361
Number of Sequences: 27780
Number of extensions: 270976
Number of successful extensions: 619
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -