Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O12
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    27   1.6  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    26   2.8  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   3.7  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    25   4.9  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   4.9  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    25   6.5  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    25   6.5  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   8.6  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   8.6  

>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 295 PNIYRNTYHHPRLAIWSCRGLLLEHMTSSQQSP 197
           P + + T H  +  IWS   L++E +TS    P
Sbjct: 572 PEVVKQTMHTEKTDIWSLGCLVIEMLTSKHPYP 604


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 496 CKTFHVRRFRRANRNAQHRSADLFE 422
           CK F+V  FRR + +  H  A  F+
Sbjct: 27  CKAFNVGNFRRKHASHSHDDASFFD 51


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 175 WAGFVVIVAIAGLTSCAQVEDPCKTKSRV 261
           WAGF V VA+   +    ++DP +T SR+
Sbjct: 400 WAGFPVDVALIECSERFGLKDPRETYSRI 428


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -3

Query: 475 RFRRANRNAQHRSADLFELWGTRSNSTSMGNRIPL*PLYVFRRKP 341
           R  R      +    L      +SNST+    +P    Y FRRKP
Sbjct: 77  RLERLQEQILNLERSLLNYKSLKSNSTTTVATVPSEKRYFFRRKP 121


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = +1

Query: 268 DDKYCDKYWEC------DSGQSVEYDCPNGLVFAGKHRGVTEGC 381
           D+ Y D+YWE       D       D  N ++FAGK+  V   C
Sbjct: 324 DEDYTDEYWEKRYVIREDQVPPQLLDLQNKVLFAGKYLNVVLEC 367


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 505 SSECKTFHVRRFRRANRNAQHRSADLFELW 416
           + +CK+F+ +    A+ NAQ     +F  W
Sbjct: 110 TDKCKSFYEKEKNHASHNAQKLDVWIFNSW 139


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 152 SKCHLDITGRVLSLSW 199
           +K  LDITG++L  SW
Sbjct: 298 AKLELDITGKILRASW 313


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 60  YIFSYIYNLFYIYRVLRTLEGFDLLRAN 143
           Y FSY+ N   + ++L TLE   L + N
Sbjct: 70  YRFSYVENSCTLLQLLSTLENLQLSQVN 97


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
 Frame = +1

Query: 118 KDLIYYERTAFIKMSPGHHWAGFVVIVAIAGLTSCAQVEDPCKTKSRVVGDDKYCDKYWE 297
           + L  +E    I +  G H +    ++      +  +++D C + S      K  D  + 
Sbjct: 150 RSLKVFEENGGIYIKIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSL-----KDIDHLFR 204

Query: 298 CDSGQSV-----EYDCPNGLVFAGK---HRGVTEGCDYPWRSNYCEYPKVQINPPIGVEH 453
            D+G+ +     E+D P  L  A     H+   +  D  W +   ++P V +N P+ +  
Sbjct: 205 VDTGKGLDETFDEFD-PIALGVASLAQVHKARLKDSDV-WVAVKVQHPSVSLNSPLDLSM 262

Query: 454 CDWLY 468
             W++
Sbjct: 263 TRWVF 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,102,290
Number of Sequences: 5004
Number of extensions: 44136
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)