Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_O12
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0360 + 29542854-29542900,29542988-29543129,29543207-295445... 30 1.2
11_04_0227 + 15094941-15095445,15095773-15095865,15096209-150963... 29 2.1
06_01_1000 - 7778907-7780721 29 2.1
06_03_0465 + 21049412-21049878,21049947-21050790,21050994-210511... 29 2.8
01_06_1555 - 38219951-38221597 29 2.8
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 28 3.7
01_06_0421 + 29225157-29225831 28 3.7
09_06_0037 + 20389976-20391016,20391103-20391723 27 6.5
01_06_0748 - 31652779-31653048 27 6.5
11_03_0079 + 9669666-9669728,9670779-9672545 27 8.7
08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420 27 8.7
04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285 27 8.7
02_05_1227 - 35076047-35076217,35076737-35076797,35077038-350771... 27 8.7
01_01_0787 - 6108468-6108643,6110068-6110317 27 8.7
>05_07_0360 +
29542854-29542900,29542988-29543129,29543207-29544529,
29544642-29544715,29545850-29545964,29546682-29546714
Length = 577
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 238 PCKTKSRVVGDDKYCDKYWECD 303
PCKTK R+ G DK D ECD
Sbjct: 553 PCKTKRRLEGHDKDEDDVVECD 574
>11_04_0227 +
15094941-15095445,15095773-15095865,15096209-15096308,
15096799-15096874,15099906-15100017,15100924-15101012,
15101137-15101223,15101623-15101678,15102114-15102462
Length = 488
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 108 RTLEGFDLLRANCVHQN-VTWTSLGGFCRYRGDCWLDVMCSS 230
R E +++++ V N V W SL G CR GD + + SS
Sbjct: 60 RLREAYEIVKNMLVQPNEVIWCSLLGACRVHGDAEMSELVSS 101
>06_01_1000 - 7778907-7780721
Length = 604
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 154 KMSPGHHWAGFVVIVAIAGLTSCAQVEDPCKTKS 255
KMS GH + I+GLT ++ED C S
Sbjct: 344 KMSEGHSPDAIMYFTMISGLTQAGRLEDACSMAS 377
>06_03_0465 +
21049412-21049878,21049947-21050790,21050994-21051121,
21051232-21051247
Length = 484
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 375 LCDPSMFSGENQPVGAIVLY--RLAAVTFPIFIAILIITHDS 256
L + F V A+++Y RLAA FP F+A++++T+ S
Sbjct: 96 LLQGASFVAAGVSVTALLVYGARLAAAGFPAFVALVVVTNVS 137
>01_06_1555 - 38219951-38221597
Length = 548
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 108 RTLEGFDLLRANCVHQN-VTWTSLGGFCRYRGDCWLDVMCSS 230
R E +++++ V N V W SL G CR GD + + SS
Sbjct: 433 RLREAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSS 474
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -3
Query: 250 WSCRGLLLEHMTSSQQSP 197
WS RG ++ H+TSSQQ+P
Sbjct: 720 WSERGQVIIHVTSSQQNP 737
>01_06_0421 + 29225157-29225831
Length = 224
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 196 VAIAGLTSCAQVED-PCKTKSRVVGDDKYCD 285
+ +A L + V+ PCK + VV DD +CD
Sbjct: 37 ICVADLRAATAVDGFPCKPTASVVSDDFFCD 67
>09_06_0037 + 20389976-20391016,20391103-20391723
Length = 553
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 169 HHWAGFVVIVAIAGLTSC 222
H GFVV+ A+AGL +C
Sbjct: 29 HRLLGFVVVCAVAGLVTC 46
>01_06_0748 - 31652779-31653048
Length = 89
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 352 RRKPARWGNRTLQIGRCHIP 293
RR+P RW R+LQ G+ +P
Sbjct: 61 RRRPGRWNVRSLQGGKREVP 80
>11_03_0079 + 9669666-9669728,9670779-9672545
Length = 609
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 117 EGFDLLRANCVHQN-VTWTSLGGFCRYRGDCWLDVMCSSRR 236
E +DL++ + N V W SL G CR G+ + + + R
Sbjct: 475 EAWDLIQTMSIPPNAVIWGSLLGSCRVHGNISIGIQAAEHR 515
>08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420
Length = 647
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 117 EGFDLLRANCVHQN-VTWTSLGGFCRYRGDCWLDVMCSSRR 236
E +DL++ + N V W SL G CR G+ + + + R
Sbjct: 513 EAWDLIQTMSIPPNAVIWGSLLGSCRVHGNISIGIQAAEHR 553
>04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285
Length = 488
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 364 LYVFRRKPARWGNRTLQIGRCH 299
LYVF K W +RTL +G H
Sbjct: 190 LYVFDSKTGSWSDRTLSLGPEH 211
>02_05_1227 -
35076047-35076217,35076737-35076797,35077038-35077123,
35077213-35077301,35077685-35077766,35078094-35078136,
35078211-35078284,35078492-35078561,35078747-35078816,
35079275-35079369,35079473-35079549,35080725-35080760
Length = 317
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 127 IYYERTAFIKMSPGHHWAGFVVIVAIAGLTSCAQVEDPCKTKSRV-VGDDKYCDKYWECD 303
+ ++R +++ GH W +VI+ + C Q P + K V G C Y+E D
Sbjct: 32 VSHDRNSYVWTQEGHDWVPTLVILKLNRAALCVQ-WSPKENKFAVGSGAKSVCICYYEQD 90
Query: 304 S 306
+
Sbjct: 91 N 91
>01_01_0787 - 6108468-6108643,6110068-6110317
Length = 141
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = +1
Query: 364 GVTEGCDYP--WRSNYCEYPKVQINP 435
G GC P W+S +CE KV+ +P
Sbjct: 57 GSPRGCGVPRQWQSEHCESDKVEADP 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,828,730
Number of Sequences: 37544
Number of extensions: 294677
Number of successful extensions: 791
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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