Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O12
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    32   0.27 
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    30   1.1  
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U58764-1|AAB00723.2|  191|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81485-6|CAB03979.1|  784|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AC091125-4|AAK27888.1|  732|Caenorhabditis elegans Hypothetical ...    28   4.5  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   5.9  
AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical...    27   5.9  
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z74042-10|CAA98524.1|  307|Caenorhabditis elegans Hypothetical p...    27   7.8  
U64849-5|AAC48055.1|  174|Caenorhabditis elegans Saposin-like pr...    27   7.8  
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 247 TKSRVVGDDKYCDKYWECDSGQSVEYDCPNGLVF 348
           TK    G    C K+  C +G S  ++CPNGL F
Sbjct: 567 TKDGFFGVPSDCLKFIRCVNGISYNFECPNGLSF 600


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +1

Query: 205  AGLTSCAQVEDPCKTKSRVVGDDKYCDKYWECDSGQSVEYDCPNG-LVFAGKHRGVTEGC 381
            A +  C+  +  C +K++ +   K C+   ECD+G   E DCP   L    + R  T  C
Sbjct: 1008 APIVKCSVSQFQC-SKTKCIIKSKRCNGVQECDNGAD-EEDCPRSKLCDPDEFRCGTGLC 1065

Query: 382  DYPWRSNYCEYPKVQINPPIGVEHCD 459
                +S  C+  K+Q    +  EHC+
Sbjct: 1066 IK--QSQVCD-GKMQCLDGLDEEHCN 1088


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +1

Query: 211 LTSCAQVEDPCKTKSRVVGDDKY----CD-KYWECDSGQSVEYDCPNGLVFAGKHRGVTE 375
           L + + V     T    VGD  Y    C+ ++  C SG++   DCP  LV+   H+ + E
Sbjct: 11  LLTISTVNSKFVTDCTNVGDGMYPLGACEPRFLACVSGEARYMDCPEDLVY---HKNL-E 66

Query: 376 GCDYPWRSNYCE 411
            CD  WR N  E
Sbjct: 67  FCD--WRHNVFE 76


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 141 NCVHQNVTWTSLGGFCRYRGDCWLDVMCSS 230
           N  + N  +++ G  CRY  DC+   MCS+
Sbjct: 113 NMYNSNSQYSNSGSTCRYSTDCYSGQMCSN 142


>U58764-1|AAB00723.2|  191|Caenorhabditis elegans Hypothetical
           protein M03E7.4 protein.
          Length = 191

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 220 CAQVEDPCKTKSRVVGDDKYCDKYWECDSGQSVEYDC 330
           C   E  CK   + +  D+ C+   ECD G   E DC
Sbjct: 155 CTAGEFACKVSEQCISLDRRCNGLIECDDGTD-ERDC 190


>Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 217 SCAQVEDPCKTKSRVVGDDKYCDKYWECDSGQSVEYDC 330
           +CA  +  CK+    +  +K CD  ++CD G   E +C
Sbjct: 147 NCASEDYICKSSGLCLKPNKICDGKFDCDGGDD-EKNC 183


>Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 217 SCAQVEDPCKTKSRVVGDDKYCDKYWECDSGQSVEYDC 330
           +CA  +  CK+    +  +K CD  ++CD G   E +C
Sbjct: 147 NCASEDYICKSSGLCLKPNKICDGKFDCDGGDD-EKNC 183


>Z81485-6|CAB03979.1|  784|Caenorhabditis elegans Hypothetical
           protein C49F5.6 protein.
          Length = 784

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 229 VEDPCKTKSRVVGDDKYCDKYWE 297
           V D   TK  V+G D Y D YW+
Sbjct: 118 VTDCASTKPLVLGKDNYQDNYWD 140


>AC091125-4|AAK27888.1|  732|Caenorhabditis elegans Hypothetical
           protein Y67D2.6 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 211 LTSCAQVEDPCKTKSRVVGDDKYCDKYW 294
           LT   +VED C+    + G+ K CD+ W
Sbjct: 303 LTGQDEVEDVCEKLRELAGNLKNCDRLW 330


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 220  CAQVEDPCKTKSRVVGDDKYCDKYWECDSGQSVEYDC 330
            C + +  C  K + +     CDK  +CD G S E +C
Sbjct: 908  CTEAQFKCGDKKKCIPLTSVCDKEKDCDDG-SDELNC 943


>AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical
           protein K09D9.3 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +1

Query: 103 CYVLLKDLIYYERTAFIKMSPGHHWAGFVVIVAIAGLTSC 222
           CY ++  L++     + +++   H+ GF++++ IA +T C
Sbjct: 37  CYNVVSVLLFIGLLVWKQINLLQHFTGFIILLPIAIITDC 76


>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
            H02I12.1 protein.
          Length = 1319

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 268  DDKYCDKYWECDSGQSVEY-DCPNGLVFAGKHRGVTEGCDYPWRSNYCE 411
            +++ C    +C  G+  E+  C + L F      +T  CDYP + + CE
Sbjct: 1192 NERDCSAILQCFGGELFEHPSCQSSLAF----NQLTGKCDYPQKVSGCE 1236


>Z74042-10|CAA98524.1|  307|Caenorhabditis elegans Hypothetical
           protein T11F9.11 protein.
          Length = 307

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +1

Query: 187 VVIVAIAGLTSCAQVEDPCKTKSRVVG--DDKYCDKYWECDSGQSVEYDCPNGLVFAGKH 360
           V I ++AG T C  + D C +K   +G  D    +   +   G +    CP   +  G  
Sbjct: 171 VTIASMAGKTGCVGLVDYCASKHGAIGCHDSIAMEILAQKKYGVNTTLVCP-FFIDTGMF 229

Query: 361 RGVTEGC 381
            GVT  C
Sbjct: 230 HGVTTKC 236


>U64849-5|AAC48055.1|  174|Caenorhabditis elegans Saposin-like
           protein family protein19 protein.
          Length = 174

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 447 NTDRRIYLN-FG-VLAVIRPPWVIASLCDPSMFSGENQ 340
           NT  RI+   FG ++ +I PP ++  LC   ++  ++Q
Sbjct: 56  NTSSRIFSTIFGLIITIINPPNIVCQLCTSGLYLVQSQ 93


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 369 DPSMFSGENQPVGAIVLYRLAAVTFPIFIAILIITHDSRFGLAGV 235
           DP +    N+   ++  ++  A    +FI IL IT    FGL GV
Sbjct: 12  DPLLLGNSNRSRSSVP-WKATAKIATVFIGILFITSPIVFGLTGV 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,747,466
Number of Sequences: 27780
Number of extensions: 256150
Number of successful extensions: 708
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)