Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O12
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   2.4  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.6  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 370 TEGCDYPWRSNYCEY 414
           TEGC+  W+   C Y
Sbjct: 122 TEGCEVAWQFGKCIY 136


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 370 TEGCDYPWRSNYCEY 414
           TEGC+  W+   C Y
Sbjct: 96  TEGCEVAWQFGKCIY 110


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -1

Query: 450 LNTDRRIYLNFGVLAVIRPPWVIASLCDPSMFSGENQPVGAIVLYRLAAVTFPIF 286
           +  +R  Y N    A +RPP+  ASL   S+    ++ +    +Y     TF  F
Sbjct: 491 IQRNREFYKN----ADVRPPFTYASLIRQSIIESPDKQLTLNEIYNWFQNTFCYF 541


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +1

Query: 379 CDYPWRSNYCEYP 417
           C  PW + YC  P
Sbjct: 139 CGNPWNTRYCLTP 151


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +1

Query: 379 CDYPWRSNYCEYP 417
           C  PW + YC  P
Sbjct: 192 CGNPWNTRYCLTP 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,304
Number of Sequences: 438
Number of extensions: 3142
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)