Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O11
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0355 + 16922863-16924224                                         29   3.7  
10_01_0136 - 1639780-1639901,1640038-1640093,1641958-1642061,164...    27   8.5  
09_02_0575 + 10845261-10847057                                         27   8.5  

>09_04_0355 + 16922863-16924224
          Length = 453

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
 Frame = +3

Query: 96  SSRSLKFVPDMATGSPP------VTSGTELSSAQCEWCSSLL 203
           +S  L++V D+A G+PP      + +G++L   QC+ C++ L
Sbjct: 92  ASGDLEYVLDLAVGTPPQPITALLDTGSDLIWTQCDTCTACL 133


>10_01_0136 -
           1639780-1639901,1640038-1640093,1641958-1642061,
           1642119-1642301,1642963-1643073,1643175-1643330,
           1644627-1644866,1646496-1646603,1646764-1647903
          Length = 739

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 108 LKFVPDMATGSPPVTSGTELSSAQCEWCSSLL 203
           L+ +P +A  +P    GT+L S    WC S L
Sbjct: 655 LRAMPHLALTNPNEKRGTQLGSTVFTWCGSRL 686


>09_02_0575 + 10845261-10847057
          Length = 598

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 331 LQKYS*IVHNCKVKSFQIP-WLFQDFRRCIINSIITYFIQIKYSLHMCCNFISN 489
           L  +  ++H  +++S  +P W   D  RC     I  +I + +S  +CC FI N
Sbjct: 453 LNNWQLVLH--RIESLDLPSWALID--RCRTRRYIDTYIDVFWSPLLCCIFIGN 502


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,786,322
Number of Sequences: 37544
Number of extensions: 279276
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)