Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O10
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    57   2e-09
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    25   5.4  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   5.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   7.2  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    25   7.2  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   9.5  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    25   9.5  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 29/62 (46%), Positives = 35/62 (56%)
 Frame = +2

Query: 353 AAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFC 532
           AAK+                    F +LI G +RNPS++  LFS AILGFAL+EA GLFC
Sbjct: 4   AAKYIGAGLATIGVSGAGVGIGLIFSNLISGTSRNPSVRPHLFSMAILGFALTEATGLFC 63

Query: 533 LM 538
           LM
Sbjct: 64  LM 65


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 262 RLFQLHLLNYQLCAPSPEPXKTSVTK*H 345
           RLFQLH +  ++  PS +P   S    H
Sbjct: 222 RLFQLHFIGPEVVVPSKQPNLPSPLSLH 249


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 161 NAVCRKIDRPCSQDCYLQQHSSCATTRSS 247
           +A    + +PCSQ  +L++  SC T  S+
Sbjct: 377 SAYVASLPQPCSQKRHLEEDYSCLTEHSA 405


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 254  CRHCCEWSHKSCVAEDS 204
            C +C EW H  CV   S
Sbjct: 1472 CHNCLEWFHYECVGLSS 1488


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 209 DSSPGCRGDQSCGIQHFCVLRGATTDKIYTLTHTGNQYLVDVTL 78
           +S P    D + G+Q   +     T +I  ++HT N  +V + L
Sbjct: 394 ESEPELDSDGNYGLQGTIIFFQMITQQINIISHTNNSDVVGIVL 437


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 234 PLAAVPTHTQIVPVAPAQLSAVRTFPRTRKNL 329
           PL++ P HT + P+   Q ++    P  R +L
Sbjct: 363 PLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSL 394


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 167 VCRKIDRPCSQDCYLQQHSSC 229
           VC K DRP   +     HSSC
Sbjct: 83  VCTKCDRPFLSEYIEDHHSSC 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,710
Number of Sequences: 5004
Number of extensions: 40360
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)