Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O10
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786...    30   1.0  
09_06_0041 - 20440266-20441381                                         29   2.4  
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499...    27   7.2  
03_05_0351 - 23382786-23382821,23383373-23383634,23384369-233856...    27   7.2  
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366...    27   9.6  

>09_02_0362 +
           7860088-7860197,7861606-7861636,7861738-7861801,
           7861922-7862052,7863575-7863784,7863891-7863956,
           7864868-7865075,7866270-7866325,7866406-7867128,
           7868246-7868299,7868667-7868695,7869501-7869585,
           7870032-7870202,7870246-7870827
          Length = 839

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +1

Query: 109 VCVSVYILSVVAPLKTQKCCMPQD*SPLQPGLLSSATQLLCDHSQQCLHTHRLFQLHLLN 288
           +C++VY  S VA + TQ+  M Q     Q   L    QL   H  Q    ++L Q H L 
Sbjct: 634 ICLAVYHFSAVAEVPTQQPPMQQQQLQQQQNQLQQQNQLHQQHQLQ--PQNQLQQQHQLQ 691

Query: 289 YQL 297
            QL
Sbjct: 692 QQL 694


>09_06_0041 - 20440266-20441381
          Length = 371

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 450 PGTPPLNNSCSHMPS-WVSPCL 512
           PG PPLNNS    PS W+ P L
Sbjct: 349 PGAPPLNNSSLIRPSVWIFPSL 370


>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
            30550422-30550538,30550873-30551111,30552279-30552365,
            30552732-30552831,30553319-30553532,30553617-30553777
          Length = 1349

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 269  NNLCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFC 156
            ++LC C  C E  H  C  E ++      Q+C +  FC
Sbjct: 1003 SSLCTCSQCEEKYHPGCSPETTNTSNVSSQACDL--FC 1038


>03_05_0351 -
           23382786-23382821,23383373-23383634,23384369-23385675,
           23385776-23386290,23386379-23386741,23386916-23387284,
           23387365-23388057,23388152-23388238,23388354-23388612
          Length = 1296

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 134 QSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATT 238
           +S+H ++H      + D+PC+Q   L+    C+++
Sbjct: 229 RSAHLARHNELYATRRDKPCAQSIALECPEDCSSS 263


>05_01_0463 -
           3666626-3666933,3667060-3667258,3667388-3667629,
           3667823-3669035
          Length = 653

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = -2

Query: 278 CNWNNLCVCRHCCEW----SHKSCVAEDSSPGCRGDQ--SCGIQHFCVLRGATTDKIYTL 117
           CN N L VC  C +     S K    ED + GC  +    CG ++    R ATTDK Y+L
Sbjct: 312 CNSNALQVC-DCIKGFSVRSPKDWELEDRAGGCIRNTPLDCGTKNQS--RTATTDKFYSL 368

Query: 116 THTG 105
              G
Sbjct: 369 PGIG 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,765,554
Number of Sequences: 37544
Number of extensions: 272597
Number of successful extensions: 716
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)