Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_O10
(540 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 87 1e-17
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 87 1e-17
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 87 1e-17
Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical pr... 28 4.9
AC024775-1|AAK68455.1| 456|Caenorhabditis elegans Hypothetical ... 28 4.9
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 27 6.5
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 27 6.5
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 27 8.6
U41996-5|AAA83474.1| 296|Caenorhabditis elegans Hypothetical pr... 27 8.6
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 27 8.6
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 86.6 bits (205), Expect = 1e-17
Identities = 42/65 (64%), Positives = 45/65 (69%)
Frame = +2
Query: 341 DIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 520
DIDSAAK+ FG+L+IGYARNPSLKQQLFSYAILGFALSEAM
Sbjct: 18 DIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFSYAILGFALSEAM 77
Query: 521 GLFCL 535
GLFCL
Sbjct: 78 GLFCL 82
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 86.6 bits (205), Expect = 1e-17
Identities = 42/65 (64%), Positives = 45/65 (69%)
Frame = +2
Query: 341 DIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 520
DIDSAAK+ FG+L+IGYARNPSLKQQLFSYAILGFALSEAM
Sbjct: 18 DIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFSYAILGFALSEAM 77
Query: 521 GLFCL 535
GLFCL
Sbjct: 78 GLFCL 82
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 86.6 bits (205), Expect = 1e-17
Identities = 42/65 (64%), Positives = 45/65 (69%)
Frame = +2
Query: 341 DIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 520
DIDSAAK+ FG+L+IGYARNPSLKQQLFSYAILGFALSEAM
Sbjct: 42 DIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFSYAILGFALSEAM 101
Query: 521 GLFCL 535
GLFCL
Sbjct: 102 GLFCL 106
>Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical
protein F13E6.3 protein.
Length = 270
Score = 27.9 bits (59), Expect = 4.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 260 CVCRHCCEWSHKSCV 216
C C+ C +WSH +CV
Sbjct: 236 CKCKGCDQWSHLTCV 250
>AC024775-1|AAK68455.1| 456|Caenorhabditis elegans Hypothetical
protein Y41D4A.5 protein.
Length = 456
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/40 (27%), Positives = 16/40 (40%)
Frame = +2
Query: 245 SAYTHTDXXXXXXXXXXXAHLPQNPXKPLSPNDIDSAAKF 364
S+ H D P+ P P+ P D+ S+A F
Sbjct: 417 SSSNHMDEDTSTEEAASVPDFPEEPPAPMGPEDLGSSAAF 456
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 254 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTD 132
C++C +HK VA+ S P CR + G+ VL TD
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTD 1130
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 254 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTD 132
C++C +HK VA+ S P CR + G+ VL TD
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTD 1130
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 27.1 bits (57), Expect = 8.6
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Frame = +1
Query: 118 SVYILSVVAPLKTQKCCMP---QD*SPLQPGLLSSATQLLCDHSQQCLHTHRLFQLHLLN 288
S Y + AP++ Q CMP Q P + Q QQC+ T + Q
Sbjct: 117 SCYTPTTPAPVQCQPSCMPACEQSCVVQTPAAVQCVPQCQQQCQQQCVQTQPIQQCQPQC 176
Query: 289 YQLCAPSPEPXKTS 330
Q C P T+
Sbjct: 177 QQQCVQQCAPTTTA 190
>U41996-5|AAA83474.1| 296|Caenorhabditis elegans Hypothetical
protein F38E1.6 protein.
Length = 296
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 199 GLLSSATQLLCDHSQQCLHTHRLFQLHLLNY 291
G+L S +++ DH QC H++ + L L N+
Sbjct: 85 GILKSVEEII-DHELQCAHSYSYYILVLANF 114
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 281 RCNWNNLCVCRHCCEWSHKSC 219
RC N C H C+ SHK C
Sbjct: 419 RCETNADCPSSHSCQGSHKVC 439
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,004,897
Number of Sequences: 27780
Number of extensions: 245057
Number of successful extensions: 719
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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