Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_O09
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 97 6e-21
03_01_0547 + 4093196-4093657,4094267-4095148 97 6e-21
03_01_0544 + 4082528-4082989,4083585-4084466 97 6e-21
03_01_0543 + 4076981-4077442,4078145-4079026 97 6e-21
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 49 3e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 45 4e-05
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 45 4e-05
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 38 0.005
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 30 1.3
05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152 29 2.2
02_03_0125 + 15529391-15529495,15530066-15530226,15530315-155305... 29 2.2
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665 28 5.1
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 27 8.9
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 27 8.9
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 27 8.9
07_01_0219 - 1627669-1629765 27 8.9
05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230... 27 8.9
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 97.5 bits (232), Expect = 6e-21
Identities = 42/64 (65%), Positives = 54/64 (84%)
Frame = +2
Query: 5 RVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 184
++DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGV
Sbjct: 366 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
Query: 185 IKAV 196
IK V
Sbjct: 426 IKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 97.5 bits (232), Expect = 6e-21
Identities = 42/64 (65%), Positives = 54/64 (84%)
Frame = +2
Query: 5 RVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 184
++DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGV
Sbjct: 366 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
Query: 185 IKAV 196
IK V
Sbjct: 426 IKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 97.5 bits (232), Expect = 6e-21
Identities = 42/64 (65%), Positives = 54/64 (84%)
Frame = +2
Query: 5 RVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 184
++DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGV
Sbjct: 366 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
Query: 185 IKAV 196
IK V
Sbjct: 426 IKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 97.5 bits (232), Expect = 6e-21
Identities = 42/64 (65%), Positives = 54/64 (84%)
Frame = +2
Query: 5 RVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 184
++DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGV
Sbjct: 366 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGV 425
Query: 185 IKAV 196
IK V
Sbjct: 426 IKNV 429
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +2
Query: 8 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 187
++++TGK+++ P+ + S A++ + K +CVE F LGR +R T+AVG++
Sbjct: 588 LEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIAVGIV 647
Query: 188 KAV 196
V
Sbjct: 648 SRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 17 RTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 187
+ GK ++ P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 615 KAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 17 RTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 187
+ GK ++ P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 615 KAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 26 KSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 154
K + P +K+G + + + +C+E+F +FP LGRF +R
Sbjct: 373 KKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 133 GWEFL-EGLHTQGLGGNQVDNGGITRFNGF 47
G E+L EG + GGN +DN G+T +N F
Sbjct: 365 GMEYLFEGCSSITEGGNSMDNSGVTEYNLF 394
>05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152
Length = 265
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 69 PPLSTWFPPSPCVW 110
PP+S+ PPSPC W
Sbjct: 175 PPISSGMPPSPCEW 188
>02_03_0125 +
15529391-15529495,15530066-15530226,15530315-15530570,
15531360-15531374,15533608-15533967
Length = 298
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 172 RRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVNSS 285
RRRC+K L+ R W++ C G+ V + N++
Sbjct: 102 RRRCSKSVALRDLRLWEASTMCALLSVGERVRRSSNTA 139
>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
Length = 727
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 282 LSFIYNCDTSFTERCSEGKKGYKLIPFLYFLHGLYCNI 395
L + SF E+C+ GK L+ L+ + +YCN+
Sbjct: 226 LKYALRATKSF-EKCAGGKPSLNLVMSLHVVAAIYCNL 262
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 133 GWEFL-EGLHTQGLGGNQVDNGGITRFNGF 47
G E+L EG + GGN +DN G+ +N F
Sbjct: 362 GMEYLFEGCSSITEGGNSMDNSGMAEYNLF 391
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -1
Query: 394 MLQYKPCKKYRKGMSL*P-FFPSE 326
M + PCKK +KGM++ P FF S+
Sbjct: 661 MSKLNPCKKQKKGMNILPKFFTSK 684
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 27.1 bits (57), Expect = 8.9
Identities = 24/78 (30%), Positives = 32/78 (41%)
Frame = -2
Query: 267 SYFLPLVAFSAALVTLPPPASLKFTAFITPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 88
S F L A PPP TP L + A+R GN + + +R +
Sbjct: 123 SIFSALANADRAASAAPPPPP-------TPPGFSRLTAADAERAVSGNLCRCTGYRPILD 175
Query: 87 TRLTMAASPDLMDLGLSS 34
+ AA DL DLGL+S
Sbjct: 176 ACKSFAADVDLEDLGLNS 193
>07_01_0219 - 1627669-1629765
Length = 698
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 216 VAKSPKLPKKPPRARS 263
VAK PKLP++ P+ARS
Sbjct: 298 VAKLPKLPREGPKARS 313
>05_01_0296 -
2303344-2303395,2303732-2304180,2304287-2304355,
2304539-2306546,2311181-2311425
Length = 940
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 475 YSMNLHFSLQL*QNI*GVCITLYKLKIMLQYKPCKKYR 362
+S+N+ +SL L Q I +C+ L L + K +KY+
Sbjct: 206 WSLNIFYSLVLAQGIIFICMLLNPLTVYFVLKVRRKYK 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,307,975
Number of Sequences: 37544
Number of extensions: 322665
Number of successful extensions: 1130
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -