Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O09
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   121   5e-30
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   120   1e-29
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    53   2e-09
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    27   0.087
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   5.7  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   7.5  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   7.5  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  121 bits (291), Expect = 5e-30
 Identities = 56/66 (84%), Positives = 61/66 (92%)
 Frame = +2

Query: 5   RVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 184
           + DRR GK+TE+NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVRDMRQTVAVGV
Sbjct: 378 KCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGV 437

Query: 185 IKAVNF 202
           IKAV F
Sbjct: 438 IKAVTF 443



 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 420 HTPQMFCYNCKLKCKFIE 473
           +TP + C+   + CKF +
Sbjct: 357 YTPVLDCHTAHIACKFAD 374


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  120 bits (288), Expect = 1e-29
 Identities = 55/66 (83%), Positives = 62/66 (93%)
 Frame = +2

Query: 5   RVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 184
           + DRRTGK+TE+NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVRDMRQTVAVGV
Sbjct: 378 KCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGV 437

Query: 185 IKAVNF 202
           IK+V F
Sbjct: 438 IKSVTF 443



 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 420 HTPQMFCYNCKLKCKFIE 473
           +TP + C+   + CKF E
Sbjct: 357 YTPVLDCHTAHIACKFAE 374


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 53.2 bits (122), Expect = 2e-09
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +2

Query: 5   RVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 97
           + DRRTGK+TE+NPKSIKSGDAAIV L P+K
Sbjct: 89  KCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119



 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 420 HTPQMFCYNCKLKCKFIE 473
           +TP + C+   + CKF E
Sbjct: 68  YTPVLDCHTAHIACKFAE 85


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 0.087
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 172 RRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVN 279
           R RC+   ++ GS+ WQ  +SC    +  E  ++V+
Sbjct: 54  RGRCSSYLQVSGSKIWQMERSCMCCQESGEREASVS 89


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 196 HSLYYTDGDRLPHVTHGETTEGWEFLEG-LHTQGLGGNQVDNG 71
           H LYY D ++  +  + E    +E  +  L+TQ  G     NG
Sbjct: 276 HGLYYVDTEQFSNPQYEENNVQYEGSQDILNTQSFGKVVSKNG 318


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = +1

Query: 241 KSHQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLFYIFYMAYTVTLFLIYIRLY 420
           +   G+E       S L    +L +  GV K  R  N+F + +  M     L L + +++
Sbjct: 169 RKENGKEFDCHNYMSELTVDILLETAMGVSKPTRDHNAFEYAMAVMKMCDILHLRHTKIW 228

Query: 421 I 423
           +
Sbjct: 229 L 229


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 121 LEGLHTQGLGGNQVDNGGITRFNGFRVV 38
           L  LHT  L  N++   G   FNG  V+
Sbjct: 382 LYNLHTLELSDNKLRTVGAQLFNGLFVL 409


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 262 VASTVNSSVLYTTAILHSPKGVQKERRATNSFLFYI 369
           V S  +  VLYTT  + +  G  K+     SF+ Y+
Sbjct: 167 VISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYV 202


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 262 VASTVNSSVLYTTAILHSPKGVQKERRATNSFLFYI 369
           V S  +  VLYTT  + +  G  K+     SF+ Y+
Sbjct: 162 VISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYV 197


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 41  NPKSIKSGDAAIVNLVPSKPLC 106
           NP+    G   +V L PS P C
Sbjct: 66  NPEHKPPGPKDLVYLEPSPPFC 87


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 41  NPKSIKSGDAAIVNLVPSKPLC 106
           NP+    G   +V L PS P C
Sbjct: 67  NPEHKPPGPKDLVYLEPSPPFC 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,045
Number of Sequences: 438
Number of extensions: 3154
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)