Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O08
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.6  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   4.5  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   4.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   4.5  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   4.5  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        24   7.9  

>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 177 DVDVFSKRSTFEFTLCQIKN*NRC 106
           D D F++  TFE TL ++K  NRC
Sbjct: 167 DNDEFTREGTFETTLAKLK--NRC 188


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 174 VDVFSKRSTFEFTLCQIKN*NRCNFKYTFCLYI 76
           +DV +K  T++F   +I   N+CN  Y F  +I
Sbjct: 617 IDVTNK-GTYDFLYLRIDFVNKCNVGYAFINFI 648


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 283 DVL*SPPYF*RSLPRPTTWIYCRIVYYVTDRSKFS 179
           DV+ S       L RP +WI  R+  +  D SKFS
Sbjct: 139 DVMDSNGQLVLQLNRPFSWINSRLQIHSIDYSKFS 173


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -2

Query: 179  RMSMFFPKDQLLNSHCAKL----RIKIGVISNIHFVCIYVK 69
            R+++ FP  +LL   C KL    R+   ++SN H V I+ +
Sbjct: 975  RLAIAFPDKRLLQYDCGKLQVLDRLLKDLVSNGHRVLIFTQ 1015


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 238 PTTWIYCRIVYYVTDRSKFSGCRCFFQK 155
           P  W+ C  + Y+   + F    CF Q+
Sbjct: 260 PLLWLTCAFLSYMAQGNAFRSLVCFIQR 287


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 194 SIKVLRMSMFFPKDQLLNSHCAKLRIKIGVISNIHFVCIYV 72
           S  + RM +FF      N++C    +   +I++I  VCI V
Sbjct: 52  SFVISRMIIFFISLFNKNTYCELPAVADAIINSIALVCIIV 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,877
Number of Sequences: 5004
Number of extensions: 29384
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)