Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O08
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0078 - 8204353-8204548,8205431-8205703,8205972-8206028,820...    28   3.3  
02_03_0085 + 15063444-15063889,15064324-15065311                       27   7.6  

>05_03_0078 -
           8204353-8204548,8205431-8205703,8205972-8206028,
           8206110-8206135
          Length = 183

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 28  EQHICDPLLPLPSYLTYIQTKCIFEITPILILNL 129
           +Q    PLL L +Y+TYI    +  +TP++I++L
Sbjct: 87  DQEKAAPLLHLANYITYIDRTEVM-VTPLIIVDL 119


>02_03_0085 + 15063444-15063889,15064324-15065311
          Length = 477

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 273 DRPRISNAHCLDLQPGYTVGSFTTLLIDQSSQDV--DVFSKRSTFE 142
           D P++++A CL L  G   G   T++  Q+  D+   VF+  +T E
Sbjct: 383 DHPKVTHAKCLMLDLGSNSGDNQTMVTFQTLVDMTKGVFAPDATIE 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,683,475
Number of Sequences: 37544
Number of extensions: 174696
Number of successful extensions: 255
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)