Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O08
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-23|AAV34784.1|  430|Caenorhabditis elegans C-type lecti...    27   5.2  
AC024817-22|AAK68532.2|  464|Caenorhabditis elegans C-type lecti...    27   5.2  
Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>AC024817-23|AAV34784.1|  430|Caenorhabditis elegans C-type lectin
           protein 82, isoform b protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 306 PVSLRPR*MYCDRPRISNAHCLDLQP--GYTVGSFTTLLIDQSSQDVDVF 163
           P+ L P  +YC  P++S  +  +L P    +  S+ T+++ Q     D F
Sbjct: 307 PMFLTPYPLYCANPKVSGTNSTELPPLSVSSEDSYYTIMVVQDHYPSDSF 356


>AC024817-22|AAK68532.2|  464|Caenorhabditis elegans C-type lectin
           protein 82, isoform a protein.
          Length = 464

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 306 PVSLRPR*MYCDRPRISNAHCLDLQP--GYTVGSFTTLLIDQSSQDVDVF 163
           P+ L P  +YC  P++S  +  +L P    +  S+ T+++ Q     D F
Sbjct: 341 PMFLTPYPLYCANPKVSGTNSTELPPLSVSSEDSYYTIMVVQDHYPSDSF 390


>Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical
           protein DH11.3 protein.
          Length = 1270

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 214 IVYYVTDRSKFSGCRCFFQK 155
           ++Y++T  S F GCR +F +
Sbjct: 313 VIYFITGISLFFGCRLYFNQ 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,743,909
Number of Sequences: 27780
Number of extensions: 169492
Number of successful extensions: 386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)