Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O07
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    31   0.10 
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    30   0.23 
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.8  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.0  

>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +3

Query: 468 QRFVNSYIPIHRPIKAEPVQNYFTPAQLLSSRNLPGIG--LRYIVPV 602
           +RF ++ + I +PI A PV++ F  A+ L S ++  +G  LRY+  V
Sbjct: 148 KRFPDASLFIEKPISAAPVEDAFAVARRLPSESVISVGYMLRYLKTV 194


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +1

Query: 388 DLSILSRDTPT*STRLLFQNTCI*TMLSDSSIRTYLFTDQSKLNQYKTTLLQ 543
           DL+IL R+  T S  L+ Q   + T L  + + TY++T  S  + Y + LLQ
Sbjct: 344 DLAILLRNGYTKSQVLVLQMITMVTGLLGAIVATYIYTASSSSSPYGSFLLQ 395


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 242 HDTVCARNAHHQACQHLYTRRDFHVVLMDVCS 147
           H+    R+ H+ AC H+  R     +L  +CS
Sbjct: 157 HEWYTCRHCHNDACDHVLERPAVENMLCMICS 188


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 360 PDPNALWRPRPFNTQP 407
           PDPNA+ RP    +QP
Sbjct: 169 PDPNAMQRPHDLESQP 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,747
Number of Sequences: 5004
Number of extensions: 45035
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)