Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O07
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z29117-12|CAE17731.1|  179|Caenorhabditis elegans Hypothetical p...    27   8.1  

>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
           protein B0379.3b protein.
          Length = 1050

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +3

Query: 384 PRPFN----TQPRYTHVVYKASVPEHMHLNNAQRFVNSYIPIHRPIKAEP 521
           P PFN     QP Y HV  + S   +    N   + NSY P   P  ++P
Sbjct: 801 PSPFNYSQVPQPAYNHVGQQPSHMSNQPHINQNGYQNSYNPNQGPTSSDP 850


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
           protein B0379.3a protein.
          Length = 1054

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +3

Query: 384 PRPFN----TQPRYTHVVYKASVPEHMHLNNAQRFVNSYIPIHRPIKAEP 521
           P PFN     QP Y HV  + S   +    N   + NSY P   P  ++P
Sbjct: 805 PSPFNYSQVPQPAYNHVGQQPSHMSNQPHINQNGYQNSYNPNQGPTSSDP 854


>Z29117-12|CAE17731.1|  179|Caenorhabditis elegans Hypothetical
           protein C48B4.13 protein.
          Length = 179

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/13 (61%), Positives = 13/13 (100%)
 Frame = -2

Query: 357 YRWNVLPRPVLER 319
           YRWN++P+P+L+R
Sbjct: 25  YRWNLVPKPLLKR 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,979,174
Number of Sequences: 27780
Number of extensions: 252206
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)