Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O07
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   1.8  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   4.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.1  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 9   VERKTHPLVNTSAAVVTFHIVFSSDLI 89
           VE K  P+  T   V  FH++F+ DLI
Sbjct: 202 VEPKVSPM--TFCRVFPFHLMFNRDLI 226


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 9   VERKTHPLVNTSAAVVTFHIVFSSDLI 89
           VE K  P+  T   V  FH++F+ DLI
Sbjct: 202 VEPKVSPM--TFCRVFPFHLMFNRDLI 226


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 98 DCFN*ITRKHYMKSHYR 48
          +C    TR H++K+H R
Sbjct: 14 ECHKRFTRDHHLKTHMR 30


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 203 MPDGVRF*RTRYHGEVWHE 259
           +PDG+R   T++  E W E
Sbjct: 332 LPDGIRNYLTKFVSEYWME 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,150
Number of Sequences: 438
Number of extensions: 3664
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)