Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O05
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    27   1.4  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    25   5.7  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   7.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   7.5  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   9.9  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   9.9  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.9  

>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 403 EDGIFETANTVVHGLNSGIYSDASTSDAEPDIIPSPFKKH 284
           +D + + A+ V H  N  + + A T   EP +IP   KKH
Sbjct: 123 QDPVIDIAHEV-HYANVRLLAHAKTDAGEPVLIPVKLKKH 161


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 318 NQISYPVPLKNISFTKPISNRTHLKH 241
           NQ +YP   K+ +     +N+TH++H
Sbjct: 391 NQAAYPFKSKHPTSIPEANNKTHIRH 416


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 409  SIEDGIFETANTVVHGLNSGIYSDASTSDAEPDIIPSPFKKHF 281
            S+E   F+ ++ V++  N GIY+       EP +I    + HF
Sbjct: 984  SLESDAFKESSFVLNEENGGIYAGKEIDLPEPSVIDG--RPHF 1024


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 361  LNSGIYSDASTSDAEPDII 305
            LN G Y D  TSDA+PDI+
Sbjct: 1538 LNRG-YVDLITSDAKPDIV 1555


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 387 SNMPSSMLIAGEPGIFPSSSSPTVMGIAFANGSIVVSKTPSLLLEAH 527
           S++   +L A  P +FPS    T +G+A +   I+   +P + + A+
Sbjct: 474 SDIMYGVLYAYTPEVFPSKVRGTAVGLAASANRILGIFSPVIAMRAN 520


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 363 PCTTVLAVSNMPSSMLIAGEPGIFPSSSS 449
           PC + +++ N+   ML+A EP   P   S
Sbjct: 212 PCESCISLRNLEMPMLVAEEPIYEPPEDS 240


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -2

Query: 415 AISIEDGIFETANTVVHGLNSGIYSDASTSDAEPDIIPSPFKKHFFYKTNI 263
           A S  D   +   T +  +++   S+    + EPD +PS F  H +Y   I
Sbjct: 470 ATSTPDTPLKEFTTTLKDVDNEQASEFYQLEKEPDTVPSTFILHRYYTYRI 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,263
Number of Sequences: 5004
Number of extensions: 39147
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)