Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O05
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1321 - 25794146-25794904                                         29   3.3  
05_01_0120 - 828834-831143                                             29   3.3  
08_02_0114 + 12754155-12754370,12754792-12755340,12755410-127555...    28   4.4  
05_03_0485 + 14608663-14608989,14609265-14609535,14609720-146098...    28   4.4  
02_05_0118 - 25991356-25991686,25991797-25992092,25992405-259931...    28   4.4  
01_05_0791 + 25267885-25267930,25268258-25268713,25268802-252688...    28   4.4  
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132...    28   5.8  

>07_03_1321 - 25794146-25794904
          Length = 252

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = +3

Query: 396 PSSMLIAGEPGIFPSSS------SPTVMGIAFANGSIVVSKTPSLLLEA 524
           PSS L++GE  +FPS S      +P    +  A+ S   + T SL+L+A
Sbjct: 129 PSSHLLSGEGVLFPSGSGSGSAAAPAFQAMMRASSSPATNTTTSLVLDA 177


>05_01_0120 - 828834-831143
          Length = 769

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 399 SSMLIAGEPGIFPSSSSPTVMGIAFANGSIVVSKTPSLLLEAHGS 533
           SS   +  P + PS+SSPT +G++ A+ +   +  PS     H S
Sbjct: 516 SSKYSSDSPSLSPSTSSPTSLGLSPASSNFSHTLVPSSRSPLHQS 560


>08_02_0114 +
           12754155-12754370,12754792-12755340,12755410-12755512,
           12755552-12756060
          Length = 458

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -2

Query: 517 SNNDGVLETT-IEPLANAIPITVGDELLGKIPGSPAISIEDGIFETANTVVHGLNSGIYS 341
           + ND +LE   +  LA+ +P+       G+IPG P  SIE+     A T+  G N  I  
Sbjct: 245 ATNDKILENNNLAQLASLVPVNE----TGRIPGQPDSSIEN---VKAITMRGGTNE-IAK 296

Query: 340 DASTSDA 320
            AS+SD+
Sbjct: 297 KASSSDS 303


>05_03_0485 +
           14608663-14608989,14609265-14609535,14609720-14609830,
           14609870-14610423
          Length = 420

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -2

Query: 496 ETTIEPLANAIPITVGDELLGKIPGSPAISIEDGIFETANTVVHGLNSGIYSDASTSD-A 320
           ET +  LA+ +P        G+IPG P  S+E+     A T   G N GI  +AS+S+ A
Sbjct: 200 ETQLAQLASLVPANE----TGRIPGQPDTSVEN---VKAITTREGTN-GIAREASSSESA 251

Query: 319 EPDIIP 302
           + ++ P
Sbjct: 252 DKEVQP 257


>02_05_0118 -
           25991356-25991686,25991797-25992092,25992405-25993109,
           25993197-25993298,25993519-25993846,25994337-25994461,
           25994555-25994628,25995110-25995191,25995278-25995391,
           25995475-25995575,25995663-25995752,25996316-25996562
          Length = 864

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 403 EDGIFETANTVVHGLNSGIYSDASTSDAE 317
           E+G+ E A +VV G+NS I++   TS  +
Sbjct: 97  EEGVKEVALSVVSGINSSIFAYGQTSSGK 125


>01_05_0791 +
           25267885-25267930,25268258-25268713,25268802-25268832,
           25268949-25269255
          Length = 279

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 351 PEFNPCTTVLAVSNMPSSMLIAGEPGIFPSSSSPTVMGIAFANGSIVVS 497
           P +   TT ++ S  PS+M ++  P  FPS ++    G     GS  V+
Sbjct: 47  PSYPTVTTPMSASTSPSTMPMSSSPSAFPSLATAGGGGGGGGGGSWCVA 95


>12_01_0179 -
           1319291-1319332,1319884-1320579,1322759-1323207,
           1323291-1324903,1324991-1325077,1326983-1327251
          Length = 1051

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 26/79 (32%), Positives = 38/79 (48%)
 Frame = -2

Query: 523 ASSNNDGVLETTIEPLANAIPITVGDELLGKIPGSPAISIEDGIFETANTVVHGLNSGIY 344
           + S+ D   E     L  ++   +G+E+  KI G  AIS E G+ E        +NSG+ 
Sbjct: 576 SQSDGDAKQERNNSTLFGSLEAHIGEEI--KILGM-AIS-EVGVLE--------VNSGMV 623

Query: 343 SDASTSDAEPDIIPSPFKK 287
           S    +D   DI  SPF+K
Sbjct: 624 SSNQNADFSDDISSSPFQK 642


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,845,113
Number of Sequences: 37544
Number of extensions: 235263
Number of successful extensions: 585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)