Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O03
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    30   0.18 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    26   3.8  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   5.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   6.7  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    25   6.7  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   8.9  

>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -1

Query: 230 YYFPFNCVTFSDETANRRSSDVKTPTGLWIFVESDVTTTTYGARSSIRDTRP 75
           Y F F+CV  +D    R SS    P G +  +  D+T +  G+R S R  RP
Sbjct: 231 YDFVFDCV--NDNVLYRASSKFVKPDGAFFGIGGDITLSYVGSRLS-RTLRP 279


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 512 HRLPLSK*EEEEPQITQDTKSGNDELTTV 426
           H++P+++   E+   T  ++SGNDE + V
Sbjct: 320 HKVPMNEKVSEDRITTNQSRSGNDESSLV 348


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 10  EMLEKFIIKKYYKVDLVLKPSLGLVSRMLDLAPYV-VVVTSDSTNIQRPVGVLTSEDLLF 186
           +MLE FI   Y    L +KP + L  R+ D A     ++ S +   +RP  +  +  LLF
Sbjct: 59  QMLEYFIQNNYTGPYLPIKPEIWLPQRLRDEATLKDAIIKSLTVEGERPYRL--APKLLF 116

Query: 187 AVSSENV 207
            + S+ +
Sbjct: 117 LLLSQTL 123


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 58  VLKPSLGLVSRMLDLAPYVVVVTSDSTNIQRPVGVLTSEDLLFAVSSENVTQLN 219
           V  PS  + S++     YV    SDS++    V + TS +     SSE +T ++
Sbjct: 168 VFSPSASVSSKVASSVSYVSSEPSDSSSSTNTVILTTSVNSPAVSSSETLTSVS 221


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = +3

Query: 174 GSSICSLIRKCNTIEWKI-----VANFMSPTKFYINQN 272
           G ++C+  R C  + WKI       NFMS +K    QN
Sbjct: 66  GGALCTHGRDCRLVTWKIDFNCMTDNFMSLSKLAELQN 103


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 111 CRCCYIRFDKYPKARWS 161
           CR  +I  DK+PK RWS
Sbjct: 492 CRL-FITRDKFPKGRWS 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,572
Number of Sequences: 5004
Number of extensions: 33495
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)