Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O03
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422...    29   2.2  
01_06_1044 + 34082801-34084339                                         29   2.2  
03_02_0764 + 10990220-10992410,10992809-10993616,10994734-109949...    28   3.9  
01_06_0560 + 30244814-30244871,30244979-30245140,30245725-302457...    28   5.1  

>12_02_0849 -
           23640091-23640279,23640537-23640677,23640756-23642203,
           23642300-23642372,23642452-23642572,23642689-23642791,
           23642979-23643052,23643140-23643285,23643368-23643476,
           23643580-23643704,23643989-23644342,23644440-23644503,
           23644581-23645032
          Length = 1132

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 145 QRPVGVLTSEDLLFAVSSENVTQLN 219
           QRP+ V TS+D+ F ++S NV   N
Sbjct: 419 QRPIDVATSQDMRFILTSANVAPWN 443


>01_06_1044 + 34082801-34084339
          Length = 512

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 120 CYIRFDKYPKARWSFDI*GSSICSLIRKCNTIEWKIVANFMSPTK 254
           C++ F + P       +  S     IR C+  +  I+A FMSP K
Sbjct: 192 CHVVFHEDPACLAEDSMVSSQSAEFIRACSDAQNAIIARFMSPVK 236


>03_02_0764 +
           10990220-10992410,10992809-10993616,10994734-10994968,
           10995028-10995169,10997365-10997444,10997636-10997776
          Length = 1198

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 91  MLDLAPYVVVVTSDSTNIQRPVGVLTSEDLLFAVSS 198
           +LDL+P+  V + DS+ +  PV +     LLFA SS
Sbjct: 143 LLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSS 178


>01_06_0560 +
           30244814-30244871,30244979-30245140,30245725-30245786,
           30246170-30246214,30246358-30246363,30246424-30246624,
           30246735-30248024
          Length = 607

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 185 NRRSSDVKTPTGLWIFVESDVTTTTYGARSSIRDTRPSDGFKTRSTL 45
           N++S DV   +  W F   D     +G  ++I   +P DG  T S L
Sbjct: 310 NKKSFDVDLESRCWTFGLGDNGQLGHGTTATICSPQPVDGLPTGSFL 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,068,567
Number of Sequences: 37544
Number of extensions: 176859
Number of successful extensions: 366
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)