Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O03
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    31   0.007
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   10.0 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   10.0 

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.007
 Identities = 13/41 (31%), Positives = 27/41 (65%)
 Frame = +1

Query: 10  EMLEKFIIKKYYKVDLVLKPSLGLVSRMLDLAPYVVVVTSD 132
           + ++K ++K+Y KV      +LG +SR+L+  PYV+++  +
Sbjct: 436 DFVDKAMVKQYVKVKH--SATLGYISRVLEKEPYVIILDDE 474


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 92  IRDTRPSDGFKT 57
           IRD  P DG+KT
Sbjct: 167 IRDVGPEDGYKT 178


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 224 FPFNCVTFSDETANRRSSDVKTPTGLWI 141
           FPFN     + + +  SSD K     W+
Sbjct: 304 FPFNFAFIKNVSRDSNSSDFKKLVDNWM 331


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 180 SICSLIRKCNTIEWKIVANFMSP 248
           S CS+    + +E+ +V N+M P
Sbjct: 281 SSCSVFVFLSLMEFAVVNNYMGP 303


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 224 FPFNCVTFSDETANRRSSDVKTPTGLWI 141
           FPFN     + + +  SSD K     W+
Sbjct: 304 FPFNFAFIKNVSRDSNSSDFKKLIDNWM 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,125
Number of Sequences: 438
Number of extensions: 2319
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)