Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O02
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    27   1.6  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    27   2.9  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    26   5.0  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   8.8  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   8.8  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   8.8  

>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 290 PLPGSKTCRQVPIGVFR*HYFRTSTS-RLSEFTILDHIIIK-QQPRFWSKHSLYIVKKP 460
           PLPGS   + +  G F  H  +T T  +   FT       + Q  +F+  +S Y++K P
Sbjct: 50  PLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKKTTNARLQLQKFYELYSDYVLKNP 108


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 116 DATDDIRACFFANYTSALGTFKI 48
           DA   +   FF NYTSA G F I
Sbjct: 229 DAVKQMNPEFFPNYTSAAGVFAI 251


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 427 PKSWLLFNDDVVQDGKLT*PRSTGSKVMLPEHTYWYLATG 308
           P   + F    + + +   P S   K  LPE  +W L TG
Sbjct: 96  PNEGIRFRGYTIPECQKLLPSSPNGKQPLPESLFWLLVTG 135


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 353 RTSTSRLSEFTILDHIIIKQQPRFWSKHSLYIVKKPI 463
           RTS+    E TI + +I +++     KH +YI + PI
Sbjct: 876 RTSSGIQEEDTIPNEMIDEERMLDLEKHFMYITESPI 912


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 240 FYHRKLRLILELYMWVRTHVHRRVIRPHYQP--YNHRF 133
           F+HR L    +LY  +  H HR  + P+     YNH F
Sbjct: 147 FWHRYLHYNKKLYNMIHAHHHRLQV-PYAMGALYNHPF 183


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 535 KQIFPVKI-YLLVYINQYHKLQYIRD 461
           KQ+ P++   +L  I+Q  KLQY+RD
Sbjct: 287 KQVVPIQDPRILAKIHQTFKLQYLRD 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,314
Number of Sequences: 5004
Number of extensions: 58557
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)