Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O02
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0763 + 22953749-22953884,22955036-22955199,22955695-229563...    32   0.32 
12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903...    32   0.32 
01_06_1397 - 37017468-37017561,37017763-37017836,37019128-370191...    29   3.9  
10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381...    28   6.8  

>12_02_0763 +
           22953749-22953884,22955036-22955199,22955695-22956307,
           22968553-22968874,22969107-22969373,22969692-22970460
          Length = 756

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 336 NTPIGTWRQVFEPGS---GSWPGRPTTMLWLPHDIFYHRKLRLILELYMWVRTH 184
           NTP   WRQVF PGS    SW  +      L HD  YH+ +        W+RTH
Sbjct: 371 NTP--QWRQVFTPGSSVAASWLWQLAKTHVLAHDTGYHQLVS------HWLRTH 416


>12_02_0760 -
           22888636-22889407,22889503-22889769,22890001-22890302,
           22890402-22890512,22890990-22891568,22892026-22892087,
           22892434-22892754,22893434-22893776
          Length = 918

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 336 NTPIGTWRQVFEPGS---GSWPGRPTTMLWLPHDIFYHRKLRLILELYMWVRTH 184
           NTP   WRQVF PGS    SW  +      L HD  YH+ +        W+RTH
Sbjct: 532 NTP--QWRQVFTPGSSVAASWLWQLAKTHVLAHDTGYHQLVS------HWLRTH 577


>01_06_1397 -
           37017468-37017561,37017763-37017836,37019128-37019193,
           37019543-37019623,37019735-37019943,37020096-37020192,
           37020497-37020514,37020597-37020727,37021040-37021088,
           37021450-37021539,37021616-37021721,37021815-37021885,
           37021963-37022037,37022059-37022120,37022677-37022887,
           37023599-37024069,37024387-37024719
          Length = 745

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 268 GRTAWPATAPRFKNLSPSTNRCVPVALL 351
           G   +P+   R  +LSP++ RC P+A+L
Sbjct: 49  GSLPFPSNEIRISHLSPTSERCPPLAIL 76


>10_01_0345 -
           3811057-3811236,3811342-3811615,3811732-3812289,
           3812602-3812747,3812930-3813097,3813896-3814003,
           3814859-3815029,3816557-3816949,3817522-3817617,
           3817715-3817774,3818600-3818744,3819296-3819520,
           3820106-3820254
          Length = 890

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +3

Query: 30  WRQVHEYFKG--S*SRCIICKK--TRSDIVSCVIIMLK 131
           WR++HE++KG    SR +IC    +RS IV    + LK
Sbjct: 119 WRKLHEWYKGGPELSRRVICSSPTSRSYIVDVYPLRLK 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,976,490
Number of Sequences: 37544
Number of extensions: 361006
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)