Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_O01
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 27 2.8
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 26 5.0
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans... 26 5.0
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 25 6.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 6.5
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.5
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 8.7
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 25 8.7
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 25 8.7
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 8.7
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 429 NIEIGSERFVSRRRFPPSNSLIVGATT-TTNGTGYDSIMPNTPASS 563
NI G+ + R R PS LI T TNGTG S PN+ ++S
Sbjct: 17 NIYSGASPYTQRVR--PSYELIEAPTRQATNGTGSVSGSPNSSSNS 60
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = -2
Query: 371 TESAQHRAQHSATKVFQSVRRVNIFILTVVFTEGALVRQSASHSSFTAHPSYF 213
T+ A HSAT +RRV I L G L+R SF A+ YF
Sbjct: 243 TQPASEETFHSAT-----LRRVAIQDLDPCMIFGFLIRDEEEWHSFEANQKYF 290
>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
transporter Hut1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 453 FVSRRRFPPSNSLIVGATTTTNGTGYDSIMPNT 551
FV +R+FPP LIV T T G S NT
Sbjct: 123 FVYKRKFPPHKYLIV--TMITAGVSIFSYFQNT 153
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +3
Query: 342 VLCPVLRAFSCPKCGATGERAHTIK---YCPE-NIEIGSERFVSRRRF 473
+LC L A CP CG+T + T YC + + + + VS F
Sbjct: 1 MLCFQLFAMGCPNCGSTTFESDTASGNTYCTQCGVVVEQDAIVSEVTF 48
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 434 DILRAVLDGVRTFSGSTTLRATESAQHRAQHSATKVFQSVRRV 306
DI+R V D + T +T ++H A + A++ F S +V
Sbjct: 127 DIIRRVADASGSKYSVHTSNSTPQSKHNAFYDASQTFGSTAKV 169
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 89 IRNVEAGTPHTYVIENLIH 33
+R ++ TP T+VI NLIH
Sbjct: 363 LRPIDPLTPTTFVINNLIH 381
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 477 PSNSLIVGATTTTNGTGYDSIMPNTP-ASSPFTIVNCN 587
P N V + T N + +++ +PNTP A T V+ N
Sbjct: 322 PLNRPYVLSATARNESSFENTLPNTPSAIQSLTTVSSN 359
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +3
Query: 405 HT-IKYCPENIEIGS---ERFVSRRRFPPSNSLIVGATTTTNGTGYDSIMPNT 551
HT I PE++ + +RF+S + P S + GAT Y+ I P T
Sbjct: 186 HTCINLLPESLFLSINVLDRFLSLQNVPASKMKLCGATALFIACKYEEIHPPT 238
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 279 KNNGENEDIYASHALKDFRGRV 344
K+NGE +Y +H LK GR+
Sbjct: 100 KSNGEMPFLYGNHVLKAHVGRI 121
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +3
Query: 12 DSASNIDVDEI--LYNIRMRSSSLNIPNEQSGNYYFGISSANNYISMLTREQLSVLRS 179
D N DV + L+N+ LN +++ YY + + Y M E + + RS
Sbjct: 1419 DVFENEDVSSLKQLHNLWKPHLQLNCLSDEVAQYYITLCKGSFYYQMRNTEDMVISRS 1476
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,177
Number of Sequences: 5004
Number of extensions: 54761
Number of successful extensions: 191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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