Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_O01
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0459 + 16159015-16159771,16160251-16160365,16160478-161608...    30   1.2  
04_04_0592 + 26477974-26479311                                         30   1.6  
02_01_0392 - 2858631-2858698,2859479-2859563,2859887-2859981,286...    30   1.6  
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572...    29   2.9  
10_07_0044 + 12319382-12319532,12319978-12320163,12320247-123203...    29   3.8  
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288...    29   3.8  
09_02_0527 + 10234622-10235773                                         27   8.8  

>04_03_0459 +
           16159015-16159771,16160251-16160365,16160478-16160844,
           16160930-16161244,16161324-16161644,16161730-16161882
          Length = 675

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 360 RAFSCPKCGATGERAHTIKYCPENIEIGSERFVSRRRFPPSNSLIVGATTTTNGTGYDSI 539
           R   C KC    ER HT K+CP++ E  +           S S + GA  T   +GY S+
Sbjct: 210 RVKHCSKCD---ERGHTYKHCPKDKEKPNAAEAGL-----SGSAVDGARPTDGTSGYTSV 261

Query: 540 M-PNTPASSP 566
           + P   + +P
Sbjct: 262 VGPGDRSPTP 271


>04_04_0592 + 26477974-26479311
          Length = 445

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 342 VLCPVL-RAFSCPKCGATGERAHTIKYCPENIEIGSERFVSRRRFPPSNSLIVGATTTTN 518
           +LCP+L R  S P   AT     T+   P  +++  ++  S R F  S+      TTTT 
Sbjct: 41  LLCPLLPRPTSRPN--ATTMATTTVAAAPPTLDVSMDK--SLRAFHASSPPPPTPTTTTT 96

Query: 519 GTGYDSIMPNTPASSP 566
            T    + P  P +SP
Sbjct: 97  PTPTPPLPPPAPPASP 112


>02_01_0392 -
           2858631-2858698,2859479-2859563,2859887-2859981,
           2860455-2860532,2860579-2860639,2861031-2861176,
           2861637-2861703
          Length = 199

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 532 IPSCPIL-QLPPHLPSLTATW 591
           +P+ PI+   PPH+PS TA W
Sbjct: 45  LPAAPIIPSCPPHIPSSTAAW 65


>04_01_0438 -
           5723451-5723759,5723795-5723863,5724025-5724210,
           5724297-5724558,5724662-5724960,5725040-5725453,
           5725533-5725899,5726002-5726146,5726562-5727558
          Length = 1015

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 378 KCGATGERAHTIKYCPENIE 437
           +C    ER HT KYCP++ E
Sbjct: 306 RCSKCDERGHTYKYCPKDKE 325


>10_07_0044 +
           12319382-12319532,12319978-12320163,12320247-12320396,
           12320495-12320644,12320728-12321417,12321641-12322033,
           12322073-12322546,12322634-12323974,12324042-12324388
          Length = 1293

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 504 TTTTNGTGYDSIMPN-TPASSPFTIVN 581
           T TT GTG  S  P  TP   PFT++N
Sbjct: 206 TPTTKGTGSVSQQPTITPRRLPFTVIN 232


>02_02_0473 -
           10727908-10728052,10728367-10728440,10728660-10728818,
           10729606-10729774,10730216-10730355,10730469-10730879,
           10731055-10731334,10731508-10731571,10731995-10733281,
           10733363-10733822,10733988-10734356
          Length = 1185

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 360 RAFSCPKCGATGERAHTIKYCPENIEIGS 446
           R   C KC   G   HT K CP+N E+ S
Sbjct: 663 RTLCCSKCDLRG---HTYKKCPKNAEVPS 688


>09_02_0527 + 10234622-10235773
          Length = 383

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 386 CYRRTCAHHQVLP*EYRNRFREIRITSAFPAVEFSD 493
           CY    ++  VL  E R+RF++ R+T  FP+ +  D
Sbjct: 345 CYEVVQSYPDVLT-EIRDRFKKPRLTPKFPSTDTKD 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,161,584
Number of Sequences: 37544
Number of extensions: 363127
Number of successful extensions: 1015
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)