Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N24
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   142   5e-35
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   9.0  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   9.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.0  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  142 bits (343), Expect = 5e-35
 Identities = 78/193 (40%), Positives = 104/193 (53%), Gaps = 1/193 (0%)
 Frame = +3

Query: 51  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVP-AASLPHVLRWYSHI 227
           M   D+ +  GL +LN +L ++S++ GY PSQAD  VF+ VG  P  A  P+  RWY  I
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 228 ASYTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXXXXX 407
           A+Y  A     ++ VS               +        LFGS                
Sbjct: 61  ATYDLATLPGTAKEVSAYGPEGAAAAEEDEID--------LFGS-DEEEDPEAERIKAER 111

Query: 408 LKAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIELDGLLWGASKLVPVGY 587
           +  Y  KK+ KP  + KS + LDVKPWDDET M E+E  VR+I++DGL+WG SKLVPVG+
Sbjct: 112 VAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGF 171

Query: 588 GINKLQIMCVIED 626
           G+NK QI  V+ED
Sbjct: 172 GVNKFQINLVVED 184


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 423 DKKSKKPALIAKSSIILDVKPWDDETDMKEME 518
           DK+S  P LIA++ +  ++   D+   +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 53  HFSIRNLIYSSKPHGP 6
           H  I +L+Y + PHGP
Sbjct: 262 HHKIEDLVYHAYPHGP 277


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +3

Query: 411 KAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIELDGLLWG 560
           KA  +  ++    +    + + ++ W++E    + E QVR + L  L WG
Sbjct: 298 KAETEGTNEPETSVQIDPLNVSMENWENEMKNLDCETQVRQLALYLLCWG 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,851
Number of Sequences: 5004
Number of extensions: 41280
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)