Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N21
(556 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 28 5.2
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 28 5.2
Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical pr... 27 9.1
U50199-3|AAA91263.1| 555|Caenorhabditis elegans Hypothetical pr... 27 9.1
AM748820-1|CAO72174.1| 555|Caenorhabditis elegans hexosaminidas... 27 9.1
>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical protein
ZK337.1c protein.
Length = 1516
Score = 33.1 bits (72), Expect = 0.14
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 9/148 (6%)
Frame = +2
Query: 122 AVHTDGPFDCDANGTYCFCAAIVQVCVVWTGTFP---EMALLEVALPGGYGVDASRLYSH 292
+++ D PF C +Q+ + T P MAL E+ GY DA ++++
Sbjct: 1337 SLNDDAPFFCSQEIKEIRAGNRLQLDLCCNYTRPGKSNMALAEIDALSGYRFDAEQVHTL 1396
Query: 293 LHKSDTLLRRIELSSNSGKVTMYLGVGEWGERTGRHAAPSHECYMLHTVGPVAMTRPAYV 472
D L+R+E+ + K+ +Y G R + S Y VA +PA
Sbjct: 1397 TSIED--LQRVEMEKDDTKMNVYFN--PLGGRPVCLSLYSDVTYQ------VADQKPANF 1446
Query: 473 KLQDYYRP------TITDTQTYTIPEDC 538
+L DYY P T QT ++ E C
Sbjct: 1447 RLVDYYDPEEQLKMTYAAKQTRSLQEKC 1474
>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical protein
ZK337.1b protein.
Length = 1501
Score = 33.1 bits (72), Expect = 0.14
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 9/148 (6%)
Frame = +2
Query: 122 AVHTDGPFDCDANGTYCFCAAIVQVCVVWTGTFP---EMALLEVALPGGYGVDASRLYSH 292
+++ D PF C +Q+ + T P MAL E+ GY DA ++++
Sbjct: 1340 SLNDDAPFFCSQEIKEIRAGNRLQLDLCCNYTRPGKSNMALAEIDALSGYRFDAEQVHTL 1399
Query: 293 LHKSDTLLRRIELSSNSGKVTMYLGVGEWGERTGRHAAPSHECYMLHTVGPVAMTRPAYV 472
D L+R+E+ + K+ +Y G R + S Y VA +PA
Sbjct: 1400 TSIED--LQRVEMEKDDTKMNVYFN--PLGGRPVCLSLYSDVTYQ------VADQKPANF 1449
Query: 473 KLQDYYRP------TITDTQTYTIPEDC 538
+L DYY P T QT ++ E C
Sbjct: 1450 RLVDYYDPEEQLKMTYAAKQTRSLQEKC 1477
>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical protein
ZK337.1a protein.
Length = 1508
Score = 33.1 bits (72), Expect = 0.14
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 9/148 (6%)
Frame = +2
Query: 122 AVHTDGPFDCDANGTYCFCAAIVQVCVVWTGTFP---EMALLEVALPGGYGVDASRLYSH 292
+++ D PF C +Q+ + T P MAL E+ GY DA ++++
Sbjct: 1329 SLNDDAPFFCSQEIKEIRAGNRLQLDLCCNYTRPGKSNMALAEIDALSGYRFDAEQVHTL 1388
Query: 293 LHKSDTLLRRIELSSNSGKVTMYLGVGEWGERTGRHAAPSHECYMLHTVGPVAMTRPAYV 472
D L+R+E+ + K+ +Y G R + S Y VA +PA
Sbjct: 1389 TSIED--LQRVEMEKDDTKMNVYFN--PLGGRPVCLSLYSDVTYQ------VADQKPANF 1438
Query: 473 KLQDYYRP------TITDTQTYTIPEDC 538
+L DYY P T QT ++ E C
Sbjct: 1439 RLVDYYDPEEQLKMTYAAKQTRSLQEKC 1466
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/65 (32%), Positives = 26/65 (40%)
Frame = -2
Query: 225 SGNVPVQTTHTCTMAAQKQ*VPFASQSNGPSVCTATCASSALAPELRAATEL*DRVAWTS 46
S VPV A Q P + Q N P V + A A+A LRA L + S
Sbjct: 200 SSTVPVPVASAPPGATQLSAAPVSYQPNAPPVIASINAPYAVASNLRAPYAL-QSAPYAS 258
Query: 45 AQPSP 31
A +P
Sbjct: 259 AASAP 263
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/65 (32%), Positives = 26/65 (40%)
Frame = -2
Query: 225 SGNVPVQTTHTCTMAAQKQ*VPFASQSNGPSVCTATCASSALAPELRAATEL*DRVAWTS 46
S VPV A Q P + Q N P V + A A+A LRA L + S
Sbjct: 200 SSTVPVPVASAPPGATQLSAAPVSYQPNAPPVIASINAPYAVASNLRAPYAL-QSAPYAS 258
Query: 45 AQPSP 31
A +P
Sbjct: 259 AASAP 263
>Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical
protein F17C8.1 protein.
Length = 1253
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 408 GAACRPVLSPHSPTPRYIVTLPLFELSSIR 319
G +C P + HS +PR + PLFE +S R
Sbjct: 13 GGSCGPSVRAHSSSPRRV---PLFERASAR 39
>U50199-3|AAA91263.1| 555|Caenorhabditis elegans Hypothetical
protein T14F9.3 protein.
Length = 555
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 349 GHDVPGRWRVGGEDRPTRSPL-TRVLYAAHSRTRGYDPPGL 468
G D P RW VGG PL +++Y + +RT YD G+
Sbjct: 22 GRDDPDRWSVGGV-----WPLPKKIVYGSKNRTITYDKIGI 57
>AM748820-1|CAO72174.1| 555|Caenorhabditis elegans hexosaminidase
protein.
Length = 555
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 349 GHDVPGRWRVGGEDRPTRSPL-TRVLYAAHSRTRGYDPPGL 468
G D P RW VGG PL +++Y + +RT YD G+
Sbjct: 22 GRDDPDRWSVGGV-----WPLPKKIVYGSKNRTITYDKIGI 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,132
Number of Sequences: 27780
Number of extensions: 273005
Number of successful extensions: 729
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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