Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N20
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 118 9e-28
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 78 1e-15
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 28 0.89
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 27 2.1
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 2.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.7
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 3.6
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 26 4.8
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 4.8
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 25 6.3
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar... 25 6.3
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 25 6.3
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 25 8.3
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 25 8.3
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 118 bits (283), Expect = 9e-28
Identities = 51/137 (37%), Positives = 78/137 (56%)
Frame = +2
Query: 182 IIRFEMPYNIWCEGCNNHIGMGVRYNAEKKKVGMYYTTPVYQFRMKCHLCDNHFEIKTDP 361
+IRFEMP+ +WC C N I G R+NA KK++G YYTT ++ F +KCHLC N ++ TDP
Sbjct: 22 VIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDP 81
Query: 362 GNLDYVIVSGARRQENRWDPTENGQIVPETKETQKRLFDDAMFKLEHKKGDEDGSKLDKP 541
N +Y++ SG RR+ D E P E +++ DA+ LE + + K +
Sbjct: 82 KNTEYIVASGGRRKIEPQDINER----PAKAENDEKVPSDAIEALETQLTQQKSEKHNSS 137
Query: 542 RLGKLVGRNETVWKDDY 592
+ + +NE +W D +
Sbjct: 138 VINFIYEKNERLWSDPF 154
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 77.8 bits (183), Expect = 1e-15
Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 2/156 (1%)
Frame = +2
Query: 53 MGERKGQNLYYPPDYDPKVGGLNKFLGTHALRERARKLHMGILIIRFEMPYNIWCEGCNN 232
M ERK N Y PPDYDP + K +++ + + G L +R P+++ C C
Sbjct: 1 MSERKVLNKYIPPDYDPSIRPPKK-------KKKFQGPNGGKLTVRLMTPFSMRCHTCGE 53
Query: 233 HIGMGVRYNAEKKKVG-MYYTTPVYQFRMKCHLCDNHFEIKTDPGNLDYVIVSGARRQEN 409
+I G ++NA K+K G Y++ + +F ++C C TDP + DY SGA R
Sbjct: 54 YIYKGKKFNARKEKTGEKYFSIDILRFYIRCTRCAAEITFITDPKHADYAAESGASRNYE 113
Query: 410 RWDPTENGQIVP-ETKETQKRLFDDAMFKLEHKKGD 514
W + E E +D M KLE K D
Sbjct: 114 PWHEKRLQEYEENELAERNDIPEEDEMEKLEQKTLD 149
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 28.3 bits (60), Expect = 0.89
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 65 KGQNLYYPPDYDPKVGGLNKFLGTHALRE 151
K +N PDYDPK+ GL L LR+
Sbjct: 400 KSKNSLANPDYDPKIYGLQSVLWYSKLRK 428
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +2
Query: 98 DPKVGGLNKFLGTHALRERARKLHMGILIIRFEMPYNIWCEGC 226
D +G +N ++ AL + + G+ +++ P ++W GC
Sbjct: 476 DSHIGTIN-YMAPEALTDMNAHTNSGVKLVKLGRPSDVWSLGC 517
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -2
Query: 292 SVVHPNFLLLSIVSDSHSNVIVAALAPDIVWHLEPNDEDTHVKLSSPLPEGVSA 131
SV +PN LS + SHS+ + + L+P+ + P+ + P P G+SA
Sbjct: 304 SVPNPN---LSQMGPSHSSSVPSNLSPNPAQNENPSTTSIPSINNQPFPSGLSA 354
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 100 PKSRGSKQVPRHSRPPGEG*KASHGYPHHSVRDAIQ 207
P+ GS+Q+P + + +ASH Y RD+++
Sbjct: 36 PRKEGSRQLPSSTSKDEDSEEASHKYDFEIDRDSLK 71
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 425 ENGQIVPETKETQKRLFDDAMFKLEHKKGDEDGSKLDK 538
EN ++V E KET + DA+ EH D++ SK DK
Sbjct: 431 ENNEVVTEKKETDIK--SDAV---EHSIKDKEDSKTDK 463
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 186 FGSRCHTISGARAATITLEWESD 254
FGS CH I GA+ A + E D
Sbjct: 185 FGSACHPIPGAKTAAEAKQLEYD 207
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 274 FLLLSIVSDSH-SNVIVAALAPDIVWHLEPNDEDTHVKLSSPLPEGVSAEELV*TPD 107
FL +V H +VI++ + D +W EP D T LSSP+ +S TP+
Sbjct: 700 FLRDHVVPSFHIGSVILSEI--DNLWTEEPPDSLTQRLLSSPMATFISLNVYAYTPE 754
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 357 SVFISKWLSHR*HFILN*YTGVV*YIPTFFFSALYRTPI 241
S F+SKWL R + G+V I A+++ P+
Sbjct: 365 STFLSKWLEDRQIMLYGFMMGIVALIVHLVLDAVHKIPV 403
>SPAC3H5.04 |aar2||U5 snRNP-associated protein
Aar2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 208 YLVRGLQQSHWNGSPIQC*EEESWDVLHYTCVS 306
+L + L QS WN +PI E S L Y+ +S
Sbjct: 177 FLFQRLVQSVWNDNPISALAELSISFLSYSILS 209
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 390 PDTMT*SKFPGSVFIS 343
PDT+ KFPGSV++S
Sbjct: 451 PDTVLPYKFPGSVYLS 466
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 214 PDIVWHLEPNDEDTHVKLSSPLPEGVSAEELV 119
P ++W N+E+ + L+S LP A+ L+
Sbjct: 641 PFVLWRRHSNEENKYQSLNSDLPNVDEADALM 672
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 314 MKCHLCD-NHFEIKTDPGNLDYVIVSGARRQENR 412
M C L D NHF K + N+D + + + ENR
Sbjct: 56 MDCSLADPNHFIRKVENDNMDAISANINSKLENR 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,433
Number of Sequences: 5004
Number of extensions: 63075
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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