Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N20
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0693 + 13006243-13006245,13006439-13006501,13006608-130066... 170 8e-43
01_05_0525 + 22928295-22928492,22929435-22929584,22929679-229298... 78 6e-15
01_05_0524 + 22925354-22926229 65 5e-11
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282... 33 0.23
07_03_0439 + 18212584-18213065,18214164-18215010 32 0.30
11_01_0158 + 1307648-1309462 30 1.6
12_01_0273 - 1989058-1989349,1989730-1989837,1990315-1990508,199... 29 3.7
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 29 3.7
11_01_0272 - 2042490-2042781,2043146-2043203,2043385-2043401,204... 29 3.7
01_06_1581 + 38428780-38430333 29 3.7
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 29 3.7
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811... 28 4.9
03_04_0205 - 18485933-18488446 28 6.5
05_04_0069 - 17639386-17641380 27 8.5
01_06_1772 - 39790133-39791734 27 8.5
>02_02_0693 +
13006243-13006245,13006439-13006501,13006608-13006687,
13007964-13008072,13009027-13009074,13011044-13011203,
13011295-13011458,13011549-13011902
Length = 326
Score = 170 bits (413), Expect = 8e-43
Identities = 89/198 (44%), Positives = 119/198 (60%), Gaps = 16/198 (8%)
Frame = +2
Query: 47 SEMGERKGQNLYYPPDYDPKVGGLNKFLGTHALRERARKLHMGILIIRFEMPYNIWCEGC 226
S + + N YYPP++ PK GGLNKF G HALRERARKL GILIIRFEMP+NIWC GC
Sbjct: 2 SSLAAARADNFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGC 61
Query: 227 NNHIGMGVRYNAEKKKVGMYYTTP----------------VYQFRMKCHLCDNHFEIKTD 358
N+ I GVR+NAEKK+VG YY+T ++ F MK C I+TD
Sbjct: 62 NSMIAKGVRFNAEKKQVGNYYSTKDQGSPNRFGWGYRHPMIWSFTMKSPCCKQEIVIQTD 121
Query: 359 PGNLDYVIVSGARRQENRWDPTENGQIVPETKETQKRLFDDAMFKLEHKKGDEDGSKLDK 538
P N +YVI+SGA+R+ +D + ++ E + +L D M+KLEH++ D K +
Sbjct: 122 PKNTEYVIISGAQRKTEDYDVEDAETLLLPADEERDKL-ADPMYKLEHQEEDLKKKKEAE 180
Query: 539 PRLGKLVGRNETVWKDDY 592
P L +L +++ DDY
Sbjct: 181 PVLVRLQRLSDSRHSDDY 198
>01_05_0525 +
22928295-22928492,22929435-22929584,22929679-22929813,
22929914-22929979,22931704-22931793,22932414-22932495,
22932703-22932908
Length = 308
Score = 77.8 bits (183), Expect = 6e-15
Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Frame = +2
Query: 53 MGERKGQNLYYPPDYDPKVGGLNKFLGTHALRERARKLHMGILIIRFEMPYNIWCEGCNN 232
MGERK N YYPPD+DP + R R K + +R +P +I C C
Sbjct: 1 MGERKVLNKYYPPDFDP----------SKIPRRRQPKNQQ--IKVRMMLPMSIRCGTCGT 48
Query: 233 HIGMGVRYNAEKKKV--GMYYTTPVYQFRMKCHLCDNHFEIKTDPGNLDYVIVSGARRQE 406
+I G ++N+ K+ V Y +++F KC C KTDP N DY + SGA R
Sbjct: 49 YIYKGTKFNSRKEDVEGEKYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYTVESGASRNF 108
Query: 407 NRWDPTENGQIVP-ETKETQKRLFDDAMFKLEHKKGD 514
W E ++ E ++ + DAM LE++ D
Sbjct: 109 EPW--REEDEVADREKRKRDEEEMGDAMRALENRAMD 143
>01_05_0524 + 22925354-22926229
Length = 291
Score = 64.9 bits (151), Expect = 5e-11
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Frame = +2
Query: 53 MGERKGQNLYYPPDYDPKVGGLNKFLGTHALRERARKLHMGILIIRFEMPYNIWCEGCNN 232
M ERK N +YP D+DP + R+ H +++R +P + C C
Sbjct: 1 MAERKVINKHYPDDFDPS-------------KIPRRRQHKKQMVVRMMLPMTVRCAACGE 47
Query: 233 HIGMGVRYNAEKKKV-GMYY--TTPVYQFRMKCHLCDNHFEIKTDPGNLDYVIVSGARR 400
+IG G ++N+ K+ V G Y V++F ++C C +TDP + Y + SGA R
Sbjct: 48 YIGRGTKFNSRKEDVAGERYLGAVQVFRFYIRCSRCSAEIVFRTDPASAGYALESGATR 106
>03_01_0363 +
2827990-2828055,2828215-2829306,2829715-2829837,
2829994-2830110,2830248-2830429,2830558-2830744,
2830846-2831055,2831177-2831305,2832179-2832247,
2832751-2832873,2832957-2833007,2833101-2833250
Length = 832
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 371 DYVIVSGARRQENRWDPTENGQIVPETKETQ-KRLFD-DAMFKLEHKKGDEDGS 526
D+++ R RWD TE + E +E + + F+ D ++HK G +DG+
Sbjct: 565 DFIVTGSHDRSIRRWDRTEEQLFIEEEQEKRLEETFEADLDSAMDHKYGQKDGA 618
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 58 GTKGSESLLSTRL*PKSRGSKQVPRHSRPPGEG*KASHGYPHHSVRDA 201
G +G E+LLS R P + G +P H RP EG +A +V DA
Sbjct: 213 GRRGGEALLSLRGPPAADGGGALPLHVRPAVEGDQARLPRVRPAVEDA 260
>11_01_0158 + 1307648-1309462
Length = 604
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -1
Query: 590 SHPSIQFHFYPQVSQV*AC--LTCYHPHHPFCALI*TWHHQRDV 465
S SI+F YP S A L + HP C L+ W RD+
Sbjct: 52 SADSIRFSIYPVASAAAAASLLASFSASHPLCLLLINWGAHRDL 95
>12_01_0273 -
1989058-1989349,1989730-1989837,1990315-1990508,
1990601-1990717,1990801-1990966,1991323-1991490,
1991734-1993052
Length = 787
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 29 YL*SYSSEMGERKGQNLYYPPDYDPKV 109
Y+ + E GE +G+ +YYPP P V
Sbjct: 271 YIGLWCQESGETQGKGVYYPPSGGPAV 297
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 29 YL*SYSSEMGERKGQNLYYPPDYDPKV 109
Y+ + E GE +G+ +YYPP P V
Sbjct: 274 YIGLWCQESGETQGKGVYYPPSGGPAV 300
>11_01_0272 -
2042490-2042781,2043146-2043203,2043385-2043401,
2043572-2043765,2043858-2043974,2044059-2044224,
2044430-2044597,2044741-2046047
Length = 772
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 29 YL*SYSSEMGERKGQNLYYPPDYDPKV 109
Y+ + E GE +G+ +YYPP P V
Sbjct: 272 YIGLWCQESGETQGKGVYYPPSGGPAV 298
>01_06_1581 + 38428780-38430333
Length = 517
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 247 SHSNVIVAALAPDIVWHLEPNDEDTHVKLSS 155
+H N +A A +VW L+P D +V LS+
Sbjct: 326 THRNAALAERAAGMVWRLDPTDAMPYVMLSN 356
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 277 NFLLLSIVSDSHSNVIVAAL--APDIVWHLEPNDED 176
N+ + + VS+ +++V V AL P I WH+E N D
Sbjct: 213 NYDVAANVSEDNTSVDVGALPEVPQITWHIEVNGAD 248
>01_06_1577 -
38379951-38380167,38380349-38380543,38380919-38381191,
38381281-38381455,38381925-38382035,38382120-38382390,
38382990-38383139,38383242-38384246
Length = 798
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 443 PETKETQKRLFDDAMFKLEHKKGDEDG 523
P+ KE K FDDA K E EDG
Sbjct: 122 PKEKEESKDTFDDANGKTEQSSAKEDG 148
>03_04_0205 - 18485933-18488446
Length = 837
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 244 HSNVIVAALAPDIVWHLEPNDEDTHVKLSS 155
H NV + + + + +EP DE T+V LS+
Sbjct: 647 HKNVALGRFSAEKILEIEPQDETTYVLLSN 676
>05_04_0069 - 17639386-17641380
Length = 664
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 244 HSNVIVAALAPDIVWHLEPNDEDTHVKLSS 155
H NV++A +A + ++ LEP + +V LS+
Sbjct: 474 HGNVVLAEVAAENLFQLEPENAGNYVLLSN 503
>01_06_1772 - 39790133-39791734
Length = 533
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 283 HPNFL--LLSIVSDSHSNVIVAALAPDIVWHLEPNDEDTHVKLSSPLPEGVSAEE 125
HP L LLS +H NV +A + + ++ LEP++ ++ LS+ E EE
Sbjct: 444 HPGALGALLSACK-THGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQWEE 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,357,240
Number of Sequences: 37544
Number of extensions: 431308
Number of successful extensions: 1074
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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