Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N20
(593 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47358-7|CAA87435.1| 369|Caenorhabditis elegans Hypothetical pr... 235 2e-62
U00033-9|AAC48293.1| 323|Caenorhabditis elegans Hypothetical pr... 48 4e-06
AL032630-7|CAA21563.1| 241|Caenorhabditis elegans Hypothetical ... 31 0.82
AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ... 29 3.3
Z81542-10|CAB04419.4| 411|Caenorhabditis elegans Hypothetical p... 28 4.4
Z81084-1|CAB03106.1| 228|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z54270-9|CAO82016.1| 787|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z77661-3|CAB01187.2| 264|Caenorhabditis elegans Hypothetical pr... 28 5.8
U41558-3|AAK39244.1| 556|Caenorhabditis elegans Innexin protein... 28 5.8
AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical ... 27 7.6
AF022974-9|AAC48035.3| 566|Caenorhabditis elegans Hypothetical ... 27 7.6
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 27 7.6
>Z47358-7|CAA87435.1| 369|Caenorhabditis elegans Hypothetical
protein ZK1307.9 protein.
Length = 369
Score = 235 bits (574), Expect = 2e-62
Identities = 106/181 (58%), Positives = 137/181 (75%), Gaps = 1/181 (0%)
Frame = +2
Query: 53 MGERKGQNLYYPPDYDPKVG-GLNKFLGTHALRERARKLHMGILIIRFEMPYNIWCEGCN 229
MGERKGQN YYPPD++ K LN + GTHALRERA+K+ GIL+IRFEMP+NIWC GC+
Sbjct: 1 MGERKGQNFYYPPDFNYKTHKSLNGYHGTHALRERAKKIDQGILVIRFEMPFNIWCLGCH 60
Query: 230 NHIGMGVRYNAEKKKVGMYYTTPVYQFRMKCHLCDNHFEIKTDPGNLDYVIVSGARRQEN 409
NH+GMGVRYNAEKKK+GMYYTTP+++FRMKCHLCDN++ I+TDP N DY +V G RQE
Sbjct: 61 NHVGMGVRYNAEKKKIGMYYTTPLHEFRMKCHLCDNYYVIRTDPKNFDYELVEGCSRQEL 120
Query: 410 RWDPTENGQIVPETKETQKRLFDDAMFKLEHKKGDEDGSKLDKPRLGKLVGRNETVWKDD 589
R+DPT+ QI + ++L DAMFK EH+ D+D + ++ R+ KL E + +DD
Sbjct: 121 RFDPTDIAQIGAVDRGFTQKLAADAMFKKEHEAEDKDKAATEEGRVDKLEWIQERM-RDD 179
Query: 590 Y 592
+
Sbjct: 180 F 180
>U00033-9|AAC48293.1| 323|Caenorhabditis elegans Hypothetical
protein F37C12.1 protein.
Length = 323
Score = 48.4 bits (110), Expect = 4e-06
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = +2
Query: 59 ERKGQNLYYPPDYDPKVGGLNKFLGTHALRERARKLHMGILIIRFEMPYNIWCEGCNNHI 238
ERK YYPPD+DP + R + +K + R P+N+ C C+ +I
Sbjct: 5 ERKVFQKYYPPDFDP----------SKIPRAKGQKNRQ--FVQRVMTPFNMQCNTCHEYI 52
Query: 239 GMGVRYNAEKKKV--GMYYTTPVYQFRMKCHLCDNHFEIKTDPGNLDYVIVSGARR 400
G ++N +++ Y +++F +C C KTD N DY GA R
Sbjct: 53 YKGKKFNMKRETAEGETYLGLKLFRFYFRCPNCLAEITFKTDLENCDYQNEHGATR 108
>AL032630-7|CAA21563.1| 241|Caenorhabditis elegans Hypothetical
protein Y62H9A.7 protein.
Length = 241
Score = 30.7 bits (66), Expect = 0.82
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = -2
Query: 325 MTFHSKLIHRCSVVHPNFLLLSIVSDSHSNVIVAALAPDIVWHLEPNDEDTHVKLSSPLP 146
M +H+K+ H C+ V L++++ + H +V L +++ LE ++ + S+PLP
Sbjct: 146 MMYHNKVFHHCTTVDQCGALVALLREHHEHVPGDCLT-EVLNILEQYEKQRNNLRSTPLP 204
>AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ion
channel protein 12 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 247 SHSNVIVAALAPDIVWHLEPNDEDTHVKLSSPLPEGVSAEELV*TPDFW 101
++S+++ + P I +E N+++ +KL P+ + LV PD W
Sbjct: 49 NYSSMLTVTIMPQIYNLVEVNEQNEQIKLLIWFPQSWKDDYLVWDPDEW 97
>Z81542-10|CAB04419.4| 411|Caenorhabditis elegans Hypothetical
protein F49A5.7 protein.
Length = 411
Score = 28.3 bits (60), Expect = 4.4
Identities = 7/26 (26%), Positives = 15/26 (57%)
Frame = +1
Query: 172 GYPHHSVRDAIQYLVRGLQQSHWNGS 249
G+P+ ++ D + ++ G + HW S
Sbjct: 240 GFPNKTIGDCVYFIANGTEAGHWKSS 265
>Z81084-1|CAB03106.1| 228|Caenorhabditis elegans Hypothetical
protein F46A9.1 protein.
Length = 228
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 446 ETKETQKRLFDDAMFKLEHKKGDEDGSKLDKPRLGKLVGRNETVWKDDY 592
ET E K++ ++ KLE +K E+ K++ R+ K +G+N++ D +
Sbjct: 161 ETDE-MKKVKEEFGVKLEGEKKYEEIDKMEMDRMRKEIGKNQSARDDGF 208
>Z54270-9|CAO82016.1| 787|Caenorhabditis elegans Hypothetical
protein F11C1.5c protein.
Length = 787
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 377 VIVSGARRQENRWDPTENGQIVPETKETQKRLFDDAMFKLEHKKGDEDGSKLDKPRLGKL 556
+++ G R E P N + E +E Q DD F ++H K DE K D+ L K+
Sbjct: 146 LVIDGVERAERNVLPILNNLL--ENREMQ---LDDGRFLMKHDKYDELKVKYDEATLKKM 200
>Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical
protein F11C1.5b protein.
Length = 1339
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 377 VIVSGARRQENRWDPTENGQIVPETKETQKRLFDDAMFKLEHKKGDEDGSKLDKPRLGKL 556
+++ G R E P N + E +E Q DD F ++H K DE K D+ L K+
Sbjct: 146 LVIDGVERAERNVLPILNNLL--ENREMQ---LDDGRFLMKHDKYDELKVKYDEATLKKM 200
>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical
protein F11C1.5a protein.
Length = 1804
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 377 VIVSGARRQENRWDPTENGQIVPETKETQKRLFDDAMFKLEHKKGDEDGSKLDKPRLGKL 556
+++ G R E P N + E +E Q DD F ++H K DE K D+ L K+
Sbjct: 146 LVIDGVERAERNVLPILNNLL--ENREMQ---LDDGRFLMKHDKYDELKVKYDEATLKKM 200
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 476 DDAMFKLE--HKKGDEDGSKLDKPRLGKLVGRN 568
DD ++E K D D +KLD+P+LGK+ N
Sbjct: 1427 DDEKLRMEFDRKPDDVDFNKLDEPKLGKIDPNN 1459
>Z77661-3|CAB01187.2| 264|Caenorhabditis elegans Hypothetical
protein F40G12.4 protein.
Length = 264
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 266 SQHCIGLPFQCDCCSPRTRYC 204
S HC G+PF + S RT+ C
Sbjct: 16 SYHCEGIPFHLEILSDRTKNC 36
>U41558-3|AAK39244.1| 556|Caenorhabditis elegans Innexin protein 7
protein.
Length = 556
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 64 KGSESLLSTRL*PKSRGSKQVPRHSRPPGEG*KASHGYPHHSVRDAIQYLVRGLQQSHW 240
KGS+ T+ S+ S Q +SR P AS + HH D+ + + ++ HW
Sbjct: 500 KGSKKPSPTKKKASSKNSPQSSSNSRRPSLAHTASPAFTHHHEPDS--KIPKTAEKKHW 556
>AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical
protein M04G7.1 protein.
Length = 258
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 290 CSTSQLSSSQHCIGLPFQCDCCSPRT 213
CS + +S+ Q +G QC CSP T
Sbjct: 211 CSATSVSAYQKRVGCGNQCGLCSPTT 236
>AF022974-9|AAC48035.3| 566|Caenorhabditis elegans Hypothetical
protein F26G5.1 protein.
Length = 566
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/70 (25%), Positives = 26/70 (37%)
Frame = +3
Query: 57 GNERVRIFTIHPTMTQKSGV*TSSSALTPSGRGLESFTWVSSSFGSRCHTISGARAATIT 236
G E+ +HPT Q S + TP R L+ H S A+ +
Sbjct: 308 GMEQSNSLAVHPTTVQAESQTVSKDSCTPGSRALQQPAQSIDIVDKELHN-SPAKILNLF 366
Query: 237 LEWESDTMLR 266
E DT+L+
Sbjct: 367 DELPKDTLLK 376
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 497 EHKKGDEDGSKLDKPRLGKLVGRNETVWKDD 589
EH+ D D S++D+ R + R + W DD
Sbjct: 848 EHRDYDRDRSQIDRRRQDDMGARRRSRWGDD 878
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,350,350
Number of Sequences: 27780
Number of extensions: 367230
Number of successful extensions: 1011
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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