Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N20
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.32 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.3  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   6.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.1  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
 Frame = -2

Query: 307 LIHRCSVVHPNFLLLSIVSDSHSNVIVAALAPDIV-------W-------HLEPNDEDTH 170
           L  +C++      L S ++   SN+ V +++PD+V       W        L+P D    
Sbjct: 162 LASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDMTAQWLKENSRLALKPKDVSNC 221

Query: 169 VKLSSPLPEGVSAEELV*TPD 107
           V  +   P+ V  +ELV TP+
Sbjct: 222 VLFALQTPDNVLIKELVVTPN 242


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 530 TCYHPHHP 507
           TCY+P+HP
Sbjct: 387 TCYYPYHP 394


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 530 TCYHPHHP 507
           TCY+P+HP
Sbjct: 387 TCYYPYHP 394


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 493 FEHGIIKETFLSLFSFWNYLAIFSGIPPILLS 398
           F  G+I   F  LFS +++L + S    IL++
Sbjct: 53  FMEGVIVLAFSGLFSVFSFLILVSSYIVILVN 84


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = -3

Query: 426  SVGSHLFSCLLAPDTMT*SKFPGS 355
            + G+ +++ ++AP T+T S+ PG+
Sbjct: 1267 TTGAAVYARVIAPTTITSSQSPGN 1290



 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 38  SYSSEMGERKGQNLYYPPDYDPKVGGLNKFLG 133
           +YS E+G+R+ +     P  + K  G+  ++G
Sbjct: 456 TYSQEIGDRQERESELVPYLENKGNGVYAWIG 487


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 359 DQSLSQNGYH 330
           D++LSQN YH
Sbjct: 294 DENLSQNSYH 303


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 413 WDPTENGQIVPETKET 460
           + P E+G+I  E KET
Sbjct: 795 YSPVEDGKIYSEKKET 810


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 139 VSAEELV*TPDFWVI 95
           V AEEL+  P+ W++
Sbjct: 25  VPAEELIHIPEHWLV 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,464
Number of Sequences: 438
Number of extensions: 4844
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)