Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N19
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 64 1e-11
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 56 4e-09
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 38 0.001
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.19
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 28 0.76
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa... 27 1.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.0
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 5.3
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 5.3
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 25 7.0
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 25 7.0
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 9.3
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 64.1 bits (149), Expect = 1e-11
Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Frame = -3
Query: 523 LAHLAQRMARFKKGGIPDQEAAARILLNDWNTGKVRYFTEPP---ETPDSEIHVDAKIVT 353
L ++A++ R +GGIP+ AAA I++NDW+ G++ ++ EP E SE+ D +IVT
Sbjct: 401 LVNIARKRGRLGRGGIPNLNAAANIVINDWHAGRIEWWAEPEVINEKNSSEVQ-DTQIVT 459
Query: 352 AMAEEFDINTF 320
A+EFD+N F
Sbjct: 460 EWAKEFDLNDF 470
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 55.6 bits (128), Expect = 4e-09
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Frame = -3
Query: 523 LAHLAQRMARFKKGGIPDQEAAARILLNDWNTGKVRYFTEPP--ETPDSEIHVDAKIVTA 350
LA LA++ R KGG PD+ + A+++LND+ GK+ +F P + + EI+ K+ T
Sbjct: 423 LAKLAKKGGRLLKGGEPDEASVAKMVLNDFMRGKIPWFIGPKGLSSSNDEINSSQKVATQ 482
Query: 349 MAEEFDINTFEAMETEAINALDTKPDDSDGIMITSTGPVTASAESEMQVDED 194
E D + EA E + D K D+S+ + G + S + E VD++
Sbjct: 483 QTEGSDQDGEEAEEEWHGISDDGKADESESTKPVAEGSASESTD-ESAVDDN 533
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = -3
Query: 481 GIPDQEAAARILLNDWNTGKVRYFTEPPETPDS 383
G PD AARILL D+ GK+ Y PP P+S
Sbjct: 440 GTPDDSRAARILLKDYVNGKLLYVHPPPNYPNS 472
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.19
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +3
Query: 180 SKLDPSSSTCISLSAEAVTGPVLVIMIPSESSGLVSSALMASVSIASKVLMSNSSAMAVT 359
S + SSS+ S S ++ + IPS S VSS L +S S S +S SS+ +
Sbjct: 543 SSIPTSSSSDFSSSITTISSGISSSSIPSTFSS-VSSILSSSTSSPSSTSLSISSSSTSS 601
Query: 360 IFASTCIS 383
F+S S
Sbjct: 602 TFSSASTS 609
Score = 29.1 bits (62), Expect = 0.43
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = +3
Query: 195 SSSTCISLSAEAVTGPVLVIMIPSESSGLVSSALMASVSIASKVLMSNSSAMAVT 359
SS T + + ++VT + SS +VSS+L ++ S+++ + +++S A AVT
Sbjct: 853 SSVTSTAYTTDSVTSTT-ALTSQGPSSSVVSSSLSSTTSLSTSIPVTSSVAPAVT 906
Score = 24.6 bits (51), Expect = 9.3
Identities = 25/100 (25%), Positives = 41/100 (41%)
Frame = +3
Query: 177 GSKLDPSSSTCISLSAEAVTGPVLVIMIPSESSGLVSSALMASVSIASKVLMSNSSAMAV 356
G+ SSS S+ A+T V + P+ SS S + + V ++ + SS ++
Sbjct: 919 GTDSATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSI 978
Query: 357 TIFASTCISEXXXXXXXXK*RTLPVFQSLRSILAAASWSG 476
A+ +S T S S +AAAS +G
Sbjct: 979 ---ATASVSGSSTSSVA----TASATDSSTSSIAAASVTG 1011
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 28.3 bits (60), Expect = 0.76
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 180 SKLDPSSSTCISLSAEAVTGPVLVIMIPSESSGLVSSALMASVSIASKVLMSNSSAMAVT 359
S + SSST I+ S + + IP+ S +S+ S SI S + +SS+++ +
Sbjct: 89 STISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148
Query: 360 IFASTCIS 383
+T IS
Sbjct: 149 TITTTIIS 156
Score = 27.9 bits (59), Expect = 1.00
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +3
Query: 192 PSSSTCISLSAEAVTGPVLVIMIPSESSGLVSSALMASVSIASKVLMSNSSAMAVTIFAS 371
P+SS+ +S S T PV P+ SS SS+++++ +I S +S S+ I S
Sbjct: 104 PTSSSILSNSTIPTTSPV-----PTTSSTPTSSSILSNSTIPSSSSISASTITTTIISGS 158
Query: 372 T 374
T
Sbjct: 159 T 159
>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
sulfurtransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 298
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -3
Query: 442 NDWNTGKVRYFTEPPETPDSEIHVDAKIVTAMAEEFD--INTFEAMETEAINALDTK 278
N W T + T P TP ++ AK+ + FD + E+ + ++ +D +
Sbjct: 130 NAWKTEGLELETGEPRTPKPVVYEGAKLNKDLVASFDDIVKVIESPDAAGVHIVDAR 186
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 1.7
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 180 SKLDPSSSTCISLSAEAVTGPVLVIMIPSESSGLVSSALMASVSIASKVLMSNSSAMAVT 359
S + SSS S S+ + + IPS SS S++ S S +S S+SS+ ++
Sbjct: 214 SVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSII 273
Query: 360 IFASTCIS 383
+S+ S
Sbjct: 274 SSSSSSSS 281
Score = 25.4 bits (53), Expect = 5.3
Identities = 24/98 (24%), Positives = 47/98 (47%)
Frame = +3
Query: 90 PSSCISGSIFVFSLTLLFLSNFDLILTFLGSKLDPSSSTCISLSAEAVTGPVLVIMIPSE 269
PSS S ++ SL+ + + + S L SSS+ + S+ + + ++ S
Sbjct: 222 PSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS-TASSSSSSSSIISSSSSSS 280
Query: 270 SSGLVSSALMASVSIASKVLMSNSSAMAVTIFASTCIS 383
SS +S+ ++S S +S S SS ++ + +S+ S
Sbjct: 281 SSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFS 318
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 4.0
Identities = 25/97 (25%), Positives = 44/97 (45%)
Frame = +3
Query: 93 SSCISGSIFVFSLTLLFLSNFDLILTFLGSKLDPSSSTCISLSAEAVTGPVLVIMIPSES 272
S+ ++ S + SLT L S + L S +SST ++ S + V+ P S
Sbjct: 2559 STVVNSSTPITSLTALNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 2618
Query: 273 SGLVSSALMASVSIASKVLMSNSSAMAVTIFASTCIS 383
S+AL S I S ++++S+ + + +T S
Sbjct: 2619 ----STALNTSTPITSSSVLNSSTPITSSTALNTSTS 2651
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 5.3
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = -3
Query: 316 AMETEAINA--LDTKPDDSDGIMIT----STGPVTASAESEMQVDEDGSSL--LPKNVNI 161
+ E E I + LD + S+G T S P+T +S +Q+DE + L + +N
Sbjct: 305 SFENEKIESDDLDKNEEISEGEEYTPIEESKEPITVRRDSVIQIDESSAGLTDVISELNF 364
Query: 160 RSKLDKNKRVNEKTKID 110
+ D +K N T D
Sbjct: 365 TNHNDDSKNSNITTSND 381
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 199 EDGSSLLPKNVNIRSKLDKNKRVNEKTKIDP 107
++G+ +LP N +RS K+K+ +K + P
Sbjct: 508 QNGTIVLPNNSTVRSNSVKSKKKKKKKPVVP 538
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 451 ILLNDWNTGKVRYFTEPPETPDSEI 377
ILL ++TG + FT+P P S I
Sbjct: 193 ILLRQFHTGDLSVFTDPNAAPPSVI 217
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 105 SGSIFVFSLTLLFLSNFDLILTFLGSKLD 191
SGSI S +++ ++ D++LT+L +LD
Sbjct: 305 SGSIASISPSVIAIAKQDIVLTYLYPRLD 333
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 356 HDLRVHVYLRVGCLRWFREITYLAGVPIVEKYPG 457
H++ V YL++G W +E T ++ ++PG
Sbjct: 235 HEILVSYYLQLGSEEWSKEETNQKFEEVLIEHPG 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,970
Number of Sequences: 5004
Number of extensions: 33414
Number of successful extensions: 135
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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