Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N19
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49068-9|CAA88860.1|  556|Caenorhabditis elegans Hypothetical pr...    83   2e-16
AL021571-4|CAI79270.1|  610|Caenorhabditis elegans Hypothetical ...    41   5e-04
AL021571-2|CAA16514.2|  592|Caenorhabditis elegans Hypothetical ...    41   5e-04
AL021571-1|CAA16512.2|  651|Caenorhabditis elegans Hypothetical ...    41   5e-04
Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical pr...    30   0.90 
AF003143-3|AAL65781.1|  385|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF003143-2|AAK68267.2|  554|Caenorhabditis elegans Hypothetical ...    29   2.1  
U23515-15|AAK21452.1|  928|Caenorhabditis elegans Kinesin-like p...    29   2.7  
AB023497-1|BAA88682.1|  928|Caenorhabditis elegans kinesin like ...    29   2.7  
Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z49068-9|CAA88860.1|  556|Caenorhabditis elegans Hypothetical
           protein K01C8.9 protein.
          Length = 556

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
 Frame = -3

Query: 523 LAHLAQRMARFKKGGIPDQEAAARILLNDWNTGKVRYFTEPPE--TPDSEIHVDAKIVTA 350
           LA LA+R+ + ++G  PD  AAA+ +LNDWNTGK+RY+T PPE  T   +I V A++V+ 
Sbjct: 373 LAQLARRIGKLRRGARPDVNAAAKRVLNDWNTGKLRYYTHPPEQGTAKEDIVVPAEVVSQ 432

Query: 349 MAEEFDINTFEAMETEAINALDTKPDDSDGIMITSTGPVTASAESEMQVDEDGSSLLPKN 170
            ++EFDI+     + + +  L   P +SD I+           + EM+ D +      + 
Sbjct: 433 FSKEFDIDAIAEEQNQIVEGL---PMESD-IIAPHNSDEEEDDDDEMETDVNEKK---QT 485

Query: 169 VNIRSKLDKNKRVNEKTKIDPEMQLEGN 86
           V    K+    + ++K  +   + LEGN
Sbjct: 486 VTSGRKVKGPTKDDDKPVLPESLALEGN 513


>AL021571-4|CAI79270.1|  610|Caenorhabditis elegans Hypothetical
           protein T19A6.2c protein.
          Length = 610

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -3

Query: 523 LAHLAQRMARFKKGGIPDQEAAARILLNDWNTGKVRYFTEPP 398
           L  +A +  R  KGG PD  A ++++LN++  GK+ YF  PP
Sbjct: 437 LTKIAIKQGRLLKGGDPDIVAVSKVVLNEFQRGKLPYFVPPP 478


>AL021571-2|CAA16514.2|  592|Caenorhabditis elegans Hypothetical
           protein T19A6.2b protein.
          Length = 592

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -3

Query: 523 LAHLAQRMARFKKGGIPDQEAAARILLNDWNTGKVRYFTEPP 398
           L  +A +  R  KGG PD  A ++++LN++  GK+ YF  PP
Sbjct: 378 LTKIAIKQGRLLKGGDPDIVAVSKVVLNEFQRGKLPYFVPPP 419


>AL021571-1|CAA16512.2|  651|Caenorhabditis elegans Hypothetical
           protein T19A6.2a protein.
          Length = 651

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -3

Query: 523 LAHLAQRMARFKKGGIPDQEAAARILLNDWNTGKVRYFTEPP 398
           L  +A +  R  KGG PD  A ++++LN++  GK+ YF  PP
Sbjct: 437 LTKIAIKQGRLLKGGDPDIVAVSKVVLNEFQRGKLPYFVPPP 478


>Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical
           protein C49F8.2 protein.
          Length = 771

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 19/59 (32%), Positives = 35/59 (59%)
 Frame = -3

Query: 343 EEFDINTFEAMETEAINALDTKPDDSDGIMITSTGPVTASAESEMQVDEDGSSLLPKNV 167
           E F IN F++  TE+ +  ++  DDS+   +++ G  ++S  SE  +DE  + L+ KN+
Sbjct: 397 EAFHINLFQS-STESESDDESSSDDSE---MSNDGDSSSSELSEKNLDEPTTKLINKNL 451


>AF003143-3|AAL65781.1|  385|Caenorhabditis elegans Hypothetical
           protein C53H9.2b protein.
          Length = 385

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 526 VLAHLAQRMARFKKGGIPDQEAAARILLNDWNTGKVRYFTEPPETPDSE 380
           +L  LA         GIPD   AAR++  D  +GK+ +   PP     E
Sbjct: 245 LLNSLAFMRGFMASSGIPDCSRAARLMFKDVVSGKLIWAAAPPGVEQEE 293


>AF003143-2|AAK68267.2|  554|Caenorhabditis elegans Hypothetical
           protein C53H9.2a protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 526 VLAHLAQRMARFKKGGIPDQEAAARILLNDWNTGKVRYFTEPPETPDSE 380
           +L  LA         GIPD   AAR++  D  +GK+ +   PP     E
Sbjct: 414 LLNSLAFMRGFMASSGIPDCSRAARLMFKDVVSGKLIWAAAPPGVEQEE 462


>U23515-15|AAK21452.1|  928|Caenorhabditis elegans Kinesin-like
           protein protein 6 protein.
          Length = 928

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 257 HDHKYWTCDGFSRK*N 210
           +DH YW+ DGFS K N
Sbjct: 52  YDHSYWSHDGFSEKKN 67


>AB023497-1|BAA88682.1|  928|Caenorhabditis elegans kinesin like
           protein KLP-6 protein.
          Length = 928

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 257 HDHKYWTCDGFSRK*N 210
           +DH YW+ DGFS K N
Sbjct: 52  YDHSYWSHDGFSEKKN 67


>Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical
           protein T10G3.2 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 76  SVYCYPLVAFRGLFSFFH*PFCFCLISILY*HF*GVNWIRLRLLAFHF 219
           S++    VAF      FH  F FC  S+L  ++    ++ +R + F F
Sbjct: 34  SLFFSASVAFYRKRKIFHPMFSFCFFSLLLLYYSSTTFLAIRNITFSF 81


>Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical protein
            F46C5.6 protein.
          Length = 986

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 189  DPSSSTCISLSAEAVTGPVLVIMIPSESSGLVSSALMASVSIASKVLMSNSSAM 350
            D  +S+  S+S+ + T P+    +PS   GL  SA  +S    S    ++S ++
Sbjct: 893  DAMTSSTSSISSNSFTSPLSSSSLPSSGYGLRRSATSSSAFAGSSYTSTSSYSL 946


>Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical protein
            F46C5.6 protein.
          Length = 986

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 189  DPSSSTCISLSAEAVTGPVLVIMIPSESSGLVSSALMASVSIASKVLMSNSSAM 350
            D  +S+  S+S+ + T P+    +PS   GL  SA  +S    S    ++S ++
Sbjct: 893  DAMTSSTSSISSNSFTSPLSSSSLPSSGYGLRRSATSSSAFAGSSYTSTSSYSL 946


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,028,893
Number of Sequences: 27780
Number of extensions: 193532
Number of successful extensions: 805
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)