Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N18
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 0.57
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790... 30 1.3
03_02_0220 - 6531255-6532667 29 2.3
01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485 29 2.3
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 28 4.0
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909... 28 5.3
08_02_0989 + 23368902-23369363,23370299-23370304 28 5.3
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674... 28 5.3
05_01_0008 + 60498-60552,60644-60864,60956-61013,61271-61443,615... 28 5.3
09_04_0303 - 16505782-16506902,16507232-16507292 27 7.1
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888... 27 7.1
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 27 7.1
02_02_0400 + 9836045-9837115,9837474-9838577 27 7.1
03_01_0525 + 3952095-3952217,3953131-3953614,3953695-3953750,395... 27 9.3
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.1 bits (67), Expect = 0.57
Identities = 28/88 (31%), Positives = 37/88 (42%)
Frame = +3
Query: 258 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPI 437
S S P+S P SP+ SPT Y YSP + +Y +P YS P P + +
Sbjct: 1710 SPSYSPTSPSYSYSPTSPSYSPT-SPSYNYSP--TSPSYSPTSPSYS-PTSPSYSPTS-- 1763
Query: 438 PISIPAGASLNPGIFAARSTRTMYVSSS 521
P P S +P A T Y +S
Sbjct: 1764 PSYSPTSPSYSPTSSAYSPTSPAYSPTS 1791
Score = 29.5 bits (63), Expect = 1.7
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +3
Query: 258 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYS-QPEVPIHQNMAP 434
S S P+S P SP+ SPT Y YSP + +Y +P Y+ P P + +
Sbjct: 1694 SPSYNPTSPSYSYSPTSPSYSPT-SPSYSYSP--TSPSYSPTSPSYNYSPTSPSYSPTS- 1749
Query: 435 IPISIPAGASLNPGIFAARSTRTMYVSSSS 524
P P S +P + T Y +SS
Sbjct: 1750 -PSYSPTSPSYSPTSPSYSPTSPSYSPTSS 1778
>01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099,
40479205-40480047,40480176-40480269,40480356-40481207,
40481367-40481437,40481750-40481821,40481977-40482019
Length = 1530
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 270 PPSSQKTWVQPLSPNVSPTIRYQYM-YSPYESHKTYQLQAPQYSQP-EVPIHQNMAPIPI 443
PPS + Q LS ++S TIR + ++ + HK +QP ++P+ N
Sbjct: 1394 PPSQHGSATQALSTDISSTIRLKKAGHASSDDHKLESGGVTSAAQPVDIPVSTNKEAGSF 1453
Query: 444 SIPAGASLN 470
P+G S++
Sbjct: 1454 ISPSGTSVD 1462
>03_02_0220 - 6531255-6532667
Length = 470
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 9 VGARIFVPKINEYFCVTPITLYTRL 83
VGAR + K+ E+ CVT + +YT L
Sbjct: 204 VGARQLIEKMPEFGCVTNVAVYTAL 228
>01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485
Length = 283
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 380 ASTAILSARSSDPPKYG-SYTYQYSCRSEP*P 472
AS + DPP Y +YTY+++C + P P
Sbjct: 105 ASKLVQQENDDDPPLYRVTYTYEHTCNTTPVP 136
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +3
Query: 261 DSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPY--ESHKTYQLQAPQYSQPEVPIHQNMAP 434
DS+P + W P +P P+ R + +P+ S + P P P ++ +P
Sbjct: 6 DSSPAPPHRDWFFPPAPPFLPSSRARTPRAPFPSTSRSSNPYSFPDRRPPPTPRSRSRSP 65
Query: 435 IP 440
+P
Sbjct: 66 LP 67
>10_07_0061 + 12489552-12489674,12490761-12490836,12490916-12490980,
12491089-12491166,12492156-12492236,12492813-12492974,
12493328-12493426,12493509-12494797,12495063-12495286,
12495373-12495500,12495596-12495634,12495724-12497178
Length = 1272
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 300 PLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQ 422
PL+P ++ Q+ +P + + QLQ Q Q + I Q
Sbjct: 1113 PLTPQQQMQLQQQFQQNPLQQQQLQQLQQQQQQQQQQQIQQ 1153
>08_02_0989 + 23368902-23369363,23370299-23370304
Length = 155
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 387 PQYSQPEVPIHQNMAPIPISIPAGASLNP 473
P+ QP +P HQ MAP +S + +L P
Sbjct: 4 PEQQQPPLPHHQLMAPPRMSFSSDFALEP 32
>07_03_1474 -
26766078-26766536,26766634-26766885,26767201-26767401,
26767986-26768156,26768249-26768433,26768526-26768851,
26769430-26770631
Length = 931
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 373 INCKHRNTLSPKFRSTKIWLLYLSVFLPERALTR 474
+N L+ + ++W+LYL+ L +R LTR
Sbjct: 108 LNNTFERALATMHKMPRVWVLYLTSLLDQRLLTR 141
>05_01_0008 +
60498-60552,60644-60864,60956-61013,61271-61443,
61528-61711,61823-61993,62483-62514,62596-62638,
62768-62835,63561-63605,63695-64162
Length = 505
Score = 27.9 bits (59), Expect = 5.3
Identities = 24/77 (31%), Positives = 30/77 (38%)
Frame = +3
Query: 264 SAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPIPI 443
S PP Q+ WV P P V + P K +A Q + E H N A
Sbjct: 423 SPPPPPQRRWVPPQPPGVVMPEAVAAIRQPKSLAKQPSSEASQEAAGET--HANGASSSS 480
Query: 444 SIPAGASLNPGIFAARS 494
+P A +N G A RS
Sbjct: 481 PLPEEALVN-GSDAGRS 496
>09_04_0303 - 16505782-16506902,16507232-16507292
Length = 393
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +2
Query: 245 FEMGVGLSSAVITEDLGSTIIS*RLPDNPLSIYVFAI*IAQNISTASTAILSARSSDP 418
F +G GL SAV T + ++ RL P + A + + + A+TAIL RS P
Sbjct: 72 FVLGAGLFSAVSTALYPAVVLKTRLQVAPSPAHAAASSLPPSAAAAATAIL--RSEGP 127
>08_02_1620 -
28288152-28288353,28288469-28288557,28288634-28288828,
28289082-28289423,28290227-28291672,28292590-28292666,
28293160-28294509,28295921-28296029,28296896-28297007,
28297800-28297957
Length = 1359
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 375 QLQAPQYSQPEVPIHQNMAPI-PISIPAGASLNPGIF 482
QLQ Q SQ +VP H + + + GA++ PGI+
Sbjct: 887 QLQKQQQSQMQVPQHHSGNDANELKVRQGAAMKPGIY 923
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 354 YESHKTYQLQAPQYSQPEVPIHQNMAPIPISIPAGASLN 470
++ +T QLQ Q Q V HQ + P+ + AS+N
Sbjct: 555 HQQQQTQQLQPVQQVQQSVQEHQQIKIQPVHVSMDASMN 593
>02_02_0400 + 9836045-9837115,9837474-9838577
Length = 724
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 264 SAPPSSQKTWVQPLSPNVSP--TIRYQYMYSPYESHKTYQL 380
SA P S W+ PL N + T +Y YSPY HK +++
Sbjct: 393 SAVPPSYPAWITPLLLNAADVGTTNIRY-YSPY-FHKNFEI 431
>03_01_0525 +
3952095-3952217,3953131-3953614,3953695-3953750,
3953942-3954018,3954862-3954958,3955274-3955407,
3955760-3955825,3955954-3956044
Length = 375
Score = 27.1 bits (57), Expect = 9.3
Identities = 21/71 (29%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Frame = +3
Query: 246 LKWGSDSAPPSSQKT-WVQPLSPNVSPTIRYQYMYSPY----ESHKTYQLQAPQYSQPEV 410
L WG A Q W Q PN + Y Y Y Y + Y A E
Sbjct: 269 LSWGRSPASKQDQSAVWSQQADPNQWASAYYGYGYDAYGYAQDPSYAYNSYAGYTQLRER 328
Query: 411 PI-HQNMAPIP 440
PI HQ + +P
Sbjct: 329 PIWHQQLEAMP 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,201,860
Number of Sequences: 37544
Number of extensions: 316746
Number of successful extensions: 863
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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