Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_N17
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    30   0.16 
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    26   2.6  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   3.4  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    25   4.5  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   7.9  

>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 109 PPFARQLGNIPSTSHSRVYSPLHLLFIGLFVVLR 8
           P + R+L    S S+SR  SPLH LF+ L + ++
Sbjct: 762 PSYRRRLSMSCSVSYSRSPSPLHALFLALLLGIK 795


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 277 KSILVPTPFQCLISNFWACSKAHNYCVINS 366
           K +  PTP  CL  N+    KA  YC I S
Sbjct: 158 KIVWEPTPESCLPENWHILQKALKYCDIFS 187


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 280 SILVPTPFQCLISNFWACSK 339
           ++ + T F CL+   WACSK
Sbjct: 19  ALAIMTGFPCLMYYLWACSK 38


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +1

Query: 160 IDGTSMAIAAHTRFLHCSSHKQNTM*--NEATLKINQVLPAKSILVPTPFQCLISNFWA- 330
           I+  S+AIA   RF    SH  + +   NE  +  ++V     +   + F CL  + W+ 
Sbjct: 20  IEDFSLAIA--NRFKQMGSHSDSEVDWDNEEEVWEDEVHEFCCLFCDSTFTCL-KDLWSH 76

Query: 331 CSKAHNY 351
           C +AHN+
Sbjct: 77  CKEAHNF 83


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 57  TRLWLVEGILPSCLAKGGRYG 119
           T  WL EG+ P C+ +  ++G
Sbjct: 440 TESWLKEGLRPRCITRDLKWG 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,036
Number of Sequences: 5004
Number of extensions: 31404
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)