Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N16
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 186 6e-48
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 186 7e-48
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 30 0.76
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 30 0.76
04_03_0182 - 12349072-12349149,12349459-12349656,12349746-123497... 29 1.0
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 29 1.3
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 29 1.8
06_01_0913 - 7042230-7043332,7043420-7043621 28 3.1
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 27 5.4
05_05_0137 - 22641577-22642119 27 5.4
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 27 5.4
05_03_0211 + 10236867-10237075,10238036-10238270,10238433-102386... 27 7.1
04_01_0368 + 4839043-4839483 27 7.1
02_04_0094 + 19664434-19665078 27 7.1
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 26 9.4
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 186 bits (453), Expect = 6e-48
Identities = 90/128 (70%), Positives = 103/128 (80%), Gaps = 1/128 (0%)
Frame = +2
Query: 14 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 190
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 191 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDGTPSRQWYESHYLL 370
LDTGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VD P +QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 371 PLGRKKGA 394
+GRKK A
Sbjct: 121 DIGRKKKA 128
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 186 bits (452), Expect = 7e-48
Identities = 90/128 (70%), Positives = 103/128 (80%), Gaps = 1/128 (0%)
Frame = +2
Query: 14 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALR 190
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 191 LDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDGTPSRQWYESHYLL 370
LDTGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VD P +QWY +HY +
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 371 PLGRKKGA 394
+GRKK A
Sbjct: 121 DIGRKKKA 128
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.9 bits (64), Expect = 0.76
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 5 EAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 175
EA+ G + KRR GG+RA R+K + E GR A + R RGG +
Sbjct: 36 EARRGAGK---RKRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 29.9 bits (64), Expect = 0.76
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 5 EAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTKYR 181
EA+ G + KRR GG+RA R+K + E GR A + + R RGG + R
Sbjct: 72 EARRGAGK---RKRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGRRKRRRGGRRRRR 128
Query: 182 ALR 190
R
Sbjct: 129 RRR 131
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 41 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 175
+RR GG+RA R+K + E GR A + R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 29.9 bits (64), Expect = 0.76
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +2
Query: 86 RKYELGRPAANTKLGPQRIHLVRSR----GGNTKYRALRLDTGN-FAWGS 220
R+ +LG P+ +T+ P+R+ +++R K+ A DTG F WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>04_03_0182 -
12349072-12349149,12349459-12349656,12349746-12349750,
12349928-12350041,12350129-12350240,12350363-12350377
Length = 173
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 237 LRVEHSDPHAKFPVSRRRARYLVLPPRDLTKWMRWGPSLV 118
LRV H H + +R R + + P ++ K RWG ++
Sbjct: 16 LRVMHFSGHGDWTTNRDRPTFTLYPLQECYKLWRWGTQMI 55
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 140 IHLVRSRGGNTKYRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIV 319
+H + + GG T R +R C +++ ++V++ + NELV T +N I+
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQII 435
Query: 320 V 322
V
Sbjct: 436 V 436
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 116 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 24
W+ GD+ HT ++ W+ C +YA HD
Sbjct: 570 WKMGDIVHTLTNRRWSEKC----VTYAESHD 596
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 201 PVSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSY 91
P +R+ R+ P +T + W P L +AAGRP ++
Sbjct: 180 PGTRKFWRW-AFPTHGVTVSVYWAPFLAMAAGRPENF 215
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 216 PHAKFPVSRRRARYLVLPPRDLTKWMRWGP 127
P +RRR R+ + PPR +RW P
Sbjct: 18 PSPAVAATRRRLRFPLAPPRPRPPPLRWSP 47
>05_05_0137 - 22641577-22642119
Length = 180
Score = 27.1 bits (57), Expect = 5.4
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = -2
Query: 216 PHAKFPVSRR-------RARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLP 58
PHA +S R R R +PP LT G L + P S LFLR GAR
Sbjct: 27 PHAALAISHRGKSCVRARGRRGRIPPAPLTA----GHESCLVSAVPLSGTLFLRSGAREL 82
Query: 57 PVA 49
P+A
Sbjct: 83 PLA 85
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 27.1 bits (57), Expect = 5.4
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 156 DLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLPPV---ALLL 40
DL W R S AG +FLF R G P V ALLL
Sbjct: 20 DLVLWRRRNVSAAAVAGATAVWFLFERAGYSFPSVMANALLL 61
>05_03_0211 +
10236867-10237075,10238036-10238270,10238433-10238602,
10240324-10240466,10240590-10240767,10241441-10242008,
10243001-10243113,10244521-10244764,10245201-10245278,
10246500-10246727
Length = 721
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +3
Query: 189 VLILETSHGDLNVQPARLVLLMLFIMPLTMNWCVPK-----PW*RMLLSWWMA 332
+L L L + P RL++LM+F+ T N P+ W R L WW +
Sbjct: 652 ILALVVMALSLAIVPTRLLVLMMFLEVFT-NHSPPRRASTERWTRRLREWWFS 703
>04_01_0368 + 4839043-4839483
Length = 146
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 5 EAKM--GISRDHWHKRRATGGKRA 70
EA+M G+ D WH+RRA +RA
Sbjct: 104 EARMSGGVGADQWHQRRAGSCQRA 127
>02_04_0094 + 19664434-19665078
Length = 214
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +1
Query: 316 CRGGWHT*QAVV*KPLPAATRKEER 390
C GG T +AVV LPAA RK R
Sbjct: 107 CAGGGGTAKAVVIAGLPAAARKASR 131
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 204 TSHGDLNVQPARLVLLMLFIMPLTMNWCVPKP 299
TSHG+ + +P+ L L+ F++P + N + P
Sbjct: 2527 TSHGNQHQRPSILASLLPFVLPSSSNPSLTAP 2558
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,071,545
Number of Sequences: 37544
Number of extensions: 290193
Number of successful extensions: 712
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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