Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_N16
(394 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 198 9e-52
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.096
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.096
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.096
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.096
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.096
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.096
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 30 0.51
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 30 0.51
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 30 0.51
AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical ... 27 4.8
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 26 8.4
U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical p... 26 8.4
U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical p... 26 8.4
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 198 bits (484), Expect = 9e-52
Identities = 90/127 (70%), Positives = 103/127 (81%)
Frame = +2
Query: 14 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRL 193
MGISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 194 DTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDGTPSRQWYESHYLLP 373
D+GNF+W SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VD P RQWYE+HY LP
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 374 LGRKKGA 394
L RKK A
Sbjct: 121 LARKKNA 127
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.096
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 182 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 286
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.51
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 135 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 10
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.51
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 135 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 10
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 30.3 bits (65), Expect = 0.51
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 135 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 10
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 333
>AF016674-1|AAB66132.1| 160|Caenorhabditis elegans Hypothetical
protein C03H5.4 protein.
Length = 160
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 394 GTFLPSEWQQVVAFIPLPARCAIHHDNSILYQGFGTH 284
G LP V I RC HHD + +Y G+G +
Sbjct: 9 GFLLPETLNTFVLEIQFMTRCMTHHD-AWIYNGYGCY 44
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +2
Query: 95 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 226
E R L +R L S+ G T ++ +R +TG F W +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +2
Query: 95 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSEC 226
E R L +R L S+ G T ++ +R +TG F W +C
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC 1209
>U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical
protein T22F3.11b protein.
Length = 375
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 147 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 58
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical
protein T22F3.11a protein.
Length = 453
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 147 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 58
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,203,419
Number of Sequences: 27780
Number of extensions: 217870
Number of successful extensions: 545
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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